In [1]:
# Parameters
data_name = "Foxb1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:17,594 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxb1: Motif: M01983_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxb1: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00181317

Pattern: motif9.motif

Significance: 0.0437123

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.017582499999999997

/

Pattern: metacluster_0/pattern_13

Significance: 2.0635500000000003e-05

Pattern: motif7.motif

Significance: 3.56685e-05

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 2.66301e-05

/

Pattern: metacluster_1/pattern_18

Significance: 0.00420371

Pattern: motif16.motif

Significance: 0.05762130000000001

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00021443400000000003

Pattern: motif5.motif

Significance: 0.000425174

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 2.52189e-05

Pattern: motif5.motif

Significance: 3.35055e-06

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00104734

Pattern: motif15.motif

Significance: 0.00144975

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000140244

Pattern: motif11.motif

Significance: 0.0263232

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.000146213

/

Pattern: metacluster_1/pattern_10

Significance: 0.010412000000000001

Pattern: motif3.motif

Significance: 5.84748e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.956e-05

Pattern: motif4.motif

Significance: 0.00134733

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 9.50686e-05

Pattern: motif6.motif

Significance: 0.00668431

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 2.8510900000000002e-05

Pattern: motif5.motif

Significance: 2.4430300000000002e-05

Unique Cell types only TF-MoDISco finds Foxb1: #22

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00149602

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00225349

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00974118

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00249528

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00197377

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00015286

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0007692710000000001

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00210569

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.000521592

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00028132200000000003

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0007107289999999999

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00669137

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0146959

/

Pattern: metacluster_0/pattern_19

Significance: 0.0159608

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.000145666

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00011202799999999999

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00519567

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.024346400000000004

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00887395

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0113315

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.000649339

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00109732

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00350672

Absent
No Cell types only Homer finds Foxb1