# Parameters
data_name = "Pknox1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:28:18,623 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pknox1: Motif: M09175_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pknox1: #3

Cell type	Modisco	Homer
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00017266900000000002	Pattern: motif8.motif Significance: 0.0288092
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0225669	Pattern: motif9.motif Significance: 0.05994540000000001
BRN;PTMN;A;CL	Pattern: metacluster_1/pattern_15 Significance: 0.032563	Pattern: motif8.motif Significance: 0.043868199999999996

Unique Cell types only TF-MoDISco finds Pknox1: #6

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.019063999999999998	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.051575499999999996	Absent
Heart;P0;D;En	Pattern: metacluster_1/pattern_15 Significance: 0.00509639	Absent
aB_CD40+IL4;A;CL	Pattern: metacluster_1/pattern_14 Significance: 0.0355495	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.00128707 / Pattern: metacluster_0/pattern_24 Significance: 0.00372233	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.0395708	Absent

Unique Cell types only Homer finds Pknox1: #10

Cell type	Modisco	Homer
wES;Hnd_lmb;E11.5;D;En	Absent	Pattern: motif3.motif Significance: 0.0586126
LNG;P0;D;En	Absent	Pattern: motif11.motif Significance: 0.047258999999999995 / Pattern: motif18.motif Significance: 0.0464538
SKLTL_Muscle;8wks;D;En	Absent	Pattern: motif11.motif Significance: 0.029346299999999995
plasmaB;A;CL	Absent	Pattern: motif9.motif Significance: 0.043795999999999995
gamma_delta_TCR;A;CL	Absent	Pattern: motif13.motif Significance: 0.05918880000000001
NPC;mE6;A;GEO	Absent	Pattern: motif11.motif Significance: 0.0465999
DP3a;A;CL	Absent	Pattern: motif12.motif Significance: 0.0390399
G_NRN_P;A;GEO	Absent	Pattern: motif5.motif Significance: 0.0189871
Muscle;A;CL	Absent	Pattern: motif19.motif Significance: 0.056336000000000004
wES;Md_BRN;E11.5;D;En	Absent	Pattern: motif20.motif Significance: 0.050535500000000004