In [1]:
# Parameters
data_name = "Pax7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:20,202 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Pax7: Motif: M09587_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pax7: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0416517

Pattern: motif4.motif

Significance: 0.012298299999999998

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0268873

Pattern: motif5.motif

Significance: 0.0551938

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0277743

Pattern: motif3.motif

Significance: 0.00607199

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0567665

Pattern: motif14.motif

Significance: 0.0578678

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0433354

Pattern: motif3.motif

Significance: 0.0108561

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0273194

Pattern: motif6.motif

Significance: 0.0252888

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0247467

Pattern: motif9.motif

Significance: 0.024177

ROD_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0132396

Pattern: motif2.motif

Significance: 0.014713399999999998

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.037286900000000005

/

Pattern: metacluster_1/pattern_18

Significance: 0.0531861

Pattern: motif2.motif

Significance: 0.036991699999999995

/

Pattern: motif13.motif

Significance: 0.0580401

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.028670299999999996

Pattern: motif9.motif

Significance: 0.0324172

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0559134

Pattern: motif3.motif

Significance: 0.0547048

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0556928

Pattern: motif13.motif

Significance: 0.0436039

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.026535800000000002

Pattern: motif2.motif

Significance: 0.047439499999999996

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0139065

Pattern: motif6.motif

Significance: 0.0546457

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.018388400000000003

Pattern: motif2.motif

Significance: 0.038074800000000006

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00895238

Pattern: motif3.motif

Significance: 0.035520499999999997

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0217422

Pattern: motif4.motif

Significance: 0.0309512

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.018655500000000002

Pattern: motif2.motif

Significance: 0.0476283

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0426236

/

Pattern: metacluster_0/pattern_8

Significance: 0.0133893

Pattern: motif3.motif

Significance: 0.044851199999999994

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.019911

Pattern: motif6.motif

Significance: 0.057278199999999994

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.037447

Pattern: motif14.motif

Significance: 0.0532961

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0240827

Pattern: motif2.motif

Significance: 0.0260882

Unique Cell types only TF-MoDISco finds Pax7: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.039114499999999996

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0267855

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0390607

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0244058

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0426365

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0113325

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0345455

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0279938

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03421969999999999

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.042993199999999995

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Absent
ROD_PHT_RCPTR_RTN;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0129297

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0342895

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0304048

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.048001199999999994

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0126698

Absent
Unique Cell types only Homer finds Pax7: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.05235

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0360655

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0458328

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.056535800000000004

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.0108561

/

Pattern: motif8.motif

Significance: 0.05596709999999999

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.048295199999999996