# Parameters
data_name = "Hoxc8"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:22,817 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxc8: Motif: M00391_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc8: #15

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00327716 / Pattern: metacluster_0/pattern_5 Significance: 0.017711	Pattern: motif4.motif Significance: 0.051075999999999996 / Pattern: motif8.motif Significance: 0.000716394
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00985998 / Pattern: metacluster_0/pattern_3 Significance: 0.00444082	Pattern: motif3.motif Significance: 0.0492166 / Pattern: motif5.motif Significance: 0.0122166
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.019717099999999998	Pattern: motif4.motif Significance: 0.00453226
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.024273	Pattern: motif9.motif Significance: 0.031894099999999995
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0318411	Pattern: motif2.motif Significance: 0.0599695
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0322571	Pattern: motif3.motif Significance: 0.059701800000000006
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.038720300000000006	Pattern: motif3.motif Significance: 0.037588199999999995
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0258605	Pattern: motif13.motif Significance: 0.0379766
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0015555999999999999	Pattern: motif2.motif Significance: 0.0463649
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0265274	Pattern: motif15.motif Significance: 0.05654580000000001
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0214112	Pattern: motif3.motif Significance: 0.00297139
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.019309	Pattern: motif2.motif Significance: 0.0579871
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.014858700000000002	Pattern: motif2.motif Significance: 0.0526658
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.013784000000000001	Pattern: motif14.motif Significance: 0.0191141
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0117914	Pattern: motif2.motif Significance: 0.0587809

Unique Cell types only TF-MoDISco finds Hoxc8: #8

Cell type	Modisco	Homer
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0473431 / Pattern: metacluster_1/pattern_13 Significance: 0.005345	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00106633	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.0560768	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.0353279	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00805897	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0367455	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.047448199999999996	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.0447938	Absent

Unique Cell types only Homer finds Hoxc8: #3

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Absent	Pattern: motif3.motif Significance: 0.0513768
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.000613368
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.0308502