In [1]:
# Parameters
data_name = "Hmbox1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:33,784 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hmbox1: Motif: M00419_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Hmbox1
Unique Cell types only TF-MoDISco finds Hmbox1: #14

Cell typeModiscoHomer
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.05959400000000001

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.043781099999999996

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0505312

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0445291

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.021147700000000002

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0580366

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0393445

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.055115199999999996

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0272877

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.018655500000000002

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0345455

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0466853

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0206922

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0268069

Absent
Unique Cell types only Homer finds Hmbox1: #2

Cell typeModiscoHomer
LVR;8wks;D;GEOAbsent

Pattern: motif15.motif

Significance: 0.0482277

Md_BRN;D;EnAbsent

Pattern: motif14.motif

Significance: 0.046000099999999995