In [1]:
# Parameters
data_name = "Pou3f1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:28:54,446 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Pou3f1: Motif: M09227_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou3f1: #16

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.024999

Pattern: motif4.motif

Significance: 0.0529923

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.026868299999999998

Pattern: motif3.motif

Significance: 0.044849400000000005

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.024273

Pattern: motif9.motif

Significance: 0.028082999999999997

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0189709

Pattern: motif6.motif

Significance: 0.0411654

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.036174300000000006

Pattern: motif2.motif

Significance: 0.013865700000000002

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.018814700000000004

Pattern: motif3.motif

Significance: 0.0245449

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0392343

Pattern: motif16.motif

Significance: 0.0181797

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0129257

Pattern: motif13.motif

Significance: 0.026674700000000003

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0325441

Pattern: motif4.motif

Significance: 0.0396587

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0307356

Pattern: motif2.motif

Significance: 0.0314679

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0188515

Pattern: motif2.motif

Significance: 0.0182588

/

Pattern: motif25.motif

Significance: 5.7943900000000006e-05

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.031106

Pattern: motif10.motif

Significance: 0.0272056

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0240603

Pattern: motif3.motif

Significance: 0.026474

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.014466399999999999

/

Pattern: metacluster_0/pattern_8

Significance: 0.00164221

Pattern: motif6.motif

Significance: 0.05888290000000001

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0198427

Pattern: motif14.motif

Significance: 0.028440899999999998

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0273248

/

Pattern: metacluster_1/pattern_17

Significance: 0.00100719

Pattern: motif2.motif

Significance: 0.0363652

Unique Cell types only TF-MoDISco finds Pou3f1: #17

Cell typeModiscoHomer
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.015804099999999998

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0505312

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0547105

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0461937

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.055139999999999995

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.024277200000000002

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_24

Significance: 5.01103e-06

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0442177

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.051033800000000004

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0488004

/

Pattern: metacluster_0/pattern_26

Significance: 0.03578169999999999

Absent
Erythroid;Ter119+;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0130309

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00840005

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0427733

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.025590900000000003

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0274554

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.04089980000000001

Absent
Unique Cell types only Homer finds Pou3f1: #3

Cell typeModiscoHomer
BL_CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0189771

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0183217

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0308502