# Parameters
data_name = "Nkx2-6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:34,253 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nkx2-6: Motif: M00496_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx2-6: #1

Cell type	Modisco	Homer
LNG;8wks;D;En	Pattern: metacluster_0/pattern_9 Significance: 0.000139732	Pattern: motif4.motif Significance: 0.00202871

Unique Cell types only TF-MoDISco finds Nkx2-6: #9

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.0552302	Absent
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0397983	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0405764	Absent
LNG;P0;D;En	Pattern: metacluster_1/pattern_13 Significance: 9.79582e-05	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.057726	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.051610300000000005	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.000278306	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.05507719999999999	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.055830700000000004	Absent

No Cell types only Homer finds Nkx2-6