In [1]:
# Parameters
data_name = "Msgn1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:34,829 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Msgn1: Motif: M08772_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Msgn1: #12

Cell typeModiscoHomer
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.013022999999999998

Pattern: motif15.motif

Significance: 0.00737105

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.012525

Pattern: motif7.motif

Significance: 0.00113431

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00983109

Pattern: motif2.motif

Significance: 0.000125112

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00273216

Pattern: motif4.motif

Significance: 0.0273762

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00385356

Pattern: motif4.motif

Significance: 0.00379565

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00746995

Pattern: motif2.motif

Significance: 0.0158033

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.011657899999999999

Pattern: motif13.motif

Significance: 0.02072

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00295349

Pattern: motif11.motif

Significance: 0.00267794

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0138023

/

Pattern: metacluster_1/pattern_15

Significance: 0.0229053

Pattern: motif7.motif

Significance: 0.00211711

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0213092

Pattern: motif8.motif

Significance: 0.016243

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.017353599999999997

Pattern: motif10.motif

Significance: 0.034203

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00294127

Pattern: motif2.motif

Significance: 0.00256653

Unique Cell types only TF-MoDISco finds Msgn1: #22

Cell typeModiscoHomer
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0210147

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.018650999999999997

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.0242499

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00327688

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00186561

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00248591

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00525701

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0365658

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0256688

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0204528

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0437854

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00874758

/

Pattern: metacluster_1/pattern_17

Significance: 0.030577099999999996

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.00312068

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00231861

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0174037

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0101861

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0168263

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00194811

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.014053399999999999

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00877989

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00508246

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00270145

Absent
Unique Cell types only Homer finds Msgn1: #2

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.029025400000000003

B;B220_CD43;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.05801619999999999