# Parameters
data_name = "Lmx1a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:18:15,954 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Lmx1a: Motif: M00432_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lmx1a: #13

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00283858	Pattern: motif4.motif Significance: 0.0170167
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00304219	Pattern: motif5.motif Significance: 0.0551938
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00210271	Pattern: motif3.motif Significance: 0.00799952
wES;FaceP;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0433354	Pattern: motif3.motif Significance: 0.0356255
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00477893	Pattern: motif9.motif Significance: 0.0309914
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00802805	Pattern: motif2.motif Significance: 0.0471805
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.00858656	Pattern: motif13.motif Significance: 0.0379766
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0117425	Pattern: motif4.motif Significance: 0.0236771
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.00462161	Pattern: motif2.motif Significance: 0.0568389
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0039585	Pattern: motif2.motif Significance: 0.0459115
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_8 Significance: 0.010478200000000002	Pattern: motif3.motif Significance: 0.018954
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0093618	Pattern: motif14.motif Significance: 0.00932
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.00309551	Pattern: motif2.motif Significance: 0.0432426

Unique Cell types only TF-MoDISco finds Lmx1a: #15

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.0108854	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0178457	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0127321	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.032775599999999995	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.011799299999999999	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00174116	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.010154700000000001	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00529508	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0107023	Absent
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.0531626	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.00483101	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.00344815	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.00590006	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.00232839	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.00710893	Absent

Unique Cell types only Homer finds Lmx1a: #2

Cell type	Modisco	Homer
MTR_NRN_MN1;methyl3;D;En	Absent	Pattern: motif6.motif Significance: 0.036030400000000004
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.0436536