# Parameters
data_name = "Sox18"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:31,319 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Sox18: Motif: M00204_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox18: #2

Cell type	Modisco	Homer
ES;E14;A;CL	Pattern: metacluster_1/pattern_3 Significance: 0.0151101	Pattern: motif7.motif Significance: 0.0104907
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.00396967	Pattern: motif9.motif Significance: 0.00487707

Unique Cell types only TF-MoDISco finds Sox18: #14

Cell type	Modisco	Homer
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.034187999999999996	Absent
ES;D0;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.0237088	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.052834000000000006	Absent
ES;J1;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.00607857	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.013053700000000001	Absent
ES;129SV_Jae_C57BL6J;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0161208	Absent
ES;v6.5;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.024019	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0502382	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.028960400000000004	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0192632	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.011975399999999999	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_11 Significance: 0.0165061	Absent
ES;JM8.N4;Asynch;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.021613900000000002	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.035513199999999995	Absent

No Cell types only Homer finds Sox18