In [1]:
# Parameters
data_name = "Bhlhe22"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:10,877 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Bhlhe22: Motif: M01729_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Bhlhe22: #21

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0287106

Pattern: motif5.motif

Significance: 0.00145837

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00770948

Pattern: motif12.motif

Significance: 0.026376099999999996

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0138357

Pattern: motif6.motif

Significance: 0.0280082

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0372844

Pattern: motif7.motif

Significance: 0.015511099999999998

3T3-L1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0457584

Pattern: motif15.motif

Significance: 0.0528996

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.000331391

Pattern: motif4.motif

Significance: 0.00138713

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00037632199999999995

Pattern: motif4.motif

Significance: 8.30771e-05

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00583266

Pattern: motif15.motif

Significance: 0.0146398

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00303067

Pattern: motif15.motif

Significance: 0.00130422

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00365897

Pattern: motif7.motif

Significance: 0.000367087

BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.00762122

Pattern: motif7.motif

Significance: 0.045477

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0052296999999999995

Pattern: motif2.motif

Significance: 0.011592100000000001

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.00703216

Pattern: motif13.motif

Significance: 0.00152689

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00532126

Pattern: motif2.motif

Significance: 0.0008422560000000001

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00744114

Pattern: motif4.motif

Significance: 0.020612000000000002

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00185016

Pattern: motif11.motif

Significance: 0.000237235

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00422555

/

Pattern: metacluster_1/pattern_15

Significance: 0.0156731

Pattern: motif7.motif

Significance: 6.12292e-05

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011445100000000001

Pattern: motif8.motif

Significance: 0.0425093

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00266278

Pattern: motif10.motif

Significance: 0.017767599999999998

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.000623258

Pattern: motif2.motif

Significance: 0.00490882

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.000483262

Pattern: motif4.motif

Significance: 0.0194387

Unique Cell types only TF-MoDISco finds Bhlhe22: #23

Cell typeModiscoHomer
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00692029

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.039218699999999995

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0462225

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0044731

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00651354

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00412684

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0269127

/

Pattern: metacluster_0/pattern_22

Significance: 0.00312454

/

Pattern: metacluster_0/pattern_24

Significance: 0.0149825

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0254202

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.024227099999999998

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.010449

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00753955

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0394979

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.044955300000000004

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.05548240000000001

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.042765199999999996

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00483377

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00740847

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0103318

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00268461

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0362656

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00758279

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0433191

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00508246

Absent
Unique Cell types only Homer finds Bhlhe22: #1

Cell typeModiscoHomer
wES;FaceP;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.00618658