In [1]:
# Parameters
data_name = "Nr2f2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:37,995 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nr2f2: Motif: M00184_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr2f2: #10

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00563165

Pattern: motif17.motif

Significance: 0.027783600000000002

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0516151

/

Pattern: metacluster_0/pattern_17

Significance: 0.036872800000000004

Pattern: motif18.motif

Significance: 0.055538599999999994

LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.027789499999999998

Pattern: motif2.motif

Significance: 0.00958452

wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00745566

/

Pattern: metacluster_0/pattern_15

Significance: 0.0286616

Pattern: motif9.motif

Significance: 0.0333923

wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0035479

Pattern: motif9.motif

Significance: 0.05306469999999999

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0258502

Pattern: motif1.motif

Significance: 0.022453400000000002

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0215585

Pattern: motif19.motif

Significance: 0.0370594

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.023494799999999996

/

Pattern: metacluster_0/pattern_17

Significance: 0.0326039

Pattern: motif20.motif

Significance: 0.0487434

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.038914300000000006

/

Pattern: metacluster_0/pattern_16

Significance: 0.0442209

Pattern: motif15.motif

Significance: 0.03524

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.011687799999999998

Pattern: motif2.motif

Significance: 0.018512900000000002

Unique Cell types only TF-MoDISco finds Nr2f2: #21

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00450771

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0120822

/

Pattern: metacluster_0/pattern_23

Significance: 0.039338099999999994

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.047624

Absent
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.058513800000000005

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.053231600000000004

/

Pattern: metacluster_0/pattern_17

Significance: 0.046472

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.038095300000000006

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00532911

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00555084

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.011348299999999999

/

Pattern: metacluster_0/pattern_24

Significance: 0.0165826

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00296889

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00227018

/

Pattern: metacluster_0/pattern_21

Significance: 0.0340864

/

Pattern: metacluster_0/pattern_22

Significance: 0.0110616

/

Pattern: metacluster_0/pattern_24

Significance: 0.039072699999999995

Absent
CD4+CD8-TCR+CD25+Foxp3+;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0520505

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00373249

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.044561699999999996

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.0270548

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0358837

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.040367400000000005

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.029801599999999998

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.0173108

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.049653300000000004

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00433994

Absent
Unique Cell types only Homer finds Nr2f2: #6

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0471776

Adipocyte_3T3-L1D;C57BL6;D8;D;EnAbsent

Pattern: motif10.motif

Significance: 0.00874847

ES;ZhBTc4;2;D;GEOAbsent

Pattern: motif12.motif

Significance: 0.0391728

DC_BMD;A;CLAbsent

Pattern: motif13.motif

Significance: 0.029436200000000003

npES;ZHBTC4;doxyc;treat;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.026618799999999998

placenta;A;CLAbsent

Pattern: motif12.motif

Significance: 0.05183340000000001