# Parameters
data_name = "Mafk"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:18:47,689 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 0.0291904 |
Significance: 0.020878099999999997 |
Th17;CD4+;A;CL |
Significance: 0.018219299999999997 |
Significance: 0.032507 |
3134_mammaryADNCRCNM;D;En |
Significance: 0.0221728 |
Significance: 0.00761908 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00958251 |
Significance: 0.00044373199999999996 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.018936 |
Significance: 0.0267828 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.0369913 |
Significance: 0.00930426 |
Erythroid;Ter119+;A;GEO |
Significance: 0.00128649 |
Significance: 2.3069899999999997e-05 |
AML;AE9a;A;GEO |
Significance: 0.00153653 |
Significance: 0.000163762 |
DC_LPS;6h;A;GEO |
Significance: 0.048728 |
Significance: 0.0136553 |
BSPHL;A;CL |
Significance: 0.0460138 |
Significance: 0.00396961 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00220783 |
Significance: 0.053945299999999995 |
DC_LPS;2h;A;GEO |
Significance: 0.046543 |
Significance: 0.00124459 |
NTRPHL;A;CL |
Significance: 0.0274796 |
Significance: 0.059038400000000005 |
DC_pBMD;A;GEO |
Significance: 0.0425962 |
Significance: 0.0341171 |
CH12.LX;D;En |
Significance: 0.0056904 |
Significance: 0.0500028 |
MEF.GATA-1-ER;D;En |
Significance: 0.00230673 |
Significance: 0.000242432 |
MEL;D;En |
Significance: 0.00117468 |
Significance: 0.05061740000000001 |
NIH3T3;D;En |
Significance: 0.0156217 |
Significance: 0.0109368 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0236385 |
Significance: 0.04865119999999999 |
MN1;D;En |
Significance: 0.0277598 |
Significance: 0.026365800000000002 |
3T3-L1;D;En |
Significance: 0.018610299999999996 |
Significance: 0.0081779 |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.000227667 |
Significance: 0.0577307 |
DC_BMD;A;CL |
Significance: 0.00815362 |
Significance: 0.0360681 |
MCRPHG;A;CL |
Significance: 0.009759499999999999 |
Significance: 0.00162569 |
Erythroblast;A;CL |
Significance: 0.0009676210000000001 |
Significance: 0.00450059 |
ePyramidal_NRN;A;GEO |
Significance: 0.049656099999999995 |
Significance: 0.041920599999999995 |
iPV_NRN;A;GEO |
Significance: 0.00978689 |
Significance: 0.012113500000000001 |
eCortical_NRN;A;GEO |
Significance: 0.0464816 |
Significance: 0.048045 |
SML_INTSTN;A;CL |
Significance: 0.0542799 |
Significance: 0.026582099999999997 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.052672300000000005 |
Significance: 0.05995980000000001 |
Corticotrope;A;GEO |
Significance: 0.0460505 |
Significance: 0.019644599999999998 |
Heart;D;En |
Significance: 0.057505099999999996 |
Significance: 0.045988699999999993 |
Adrenal;A;CL |
Significance: 0.037403399999999996 |
Significance: 0.00836641 |
EPP;A;En |
Significance: 0.0007791539999999999 |
Significance: 0.000931898 |
pErythroblast;A;En |
Significance: 0.00217471 |
Significance: 0.0141518 |
MegP;A;En |
Significance: 0.00146949 |
Significance: 0.0056027 |
pCMP;A;CL |
Significance: 0.00148226 |
Significance: 0.00558281 |
DC_LPS;4h;A;En |
Significance: 0.0104261 |
Significance: 0.032481499999999996 |
BRN;PTMN;A;CL |
Significance: 0.05909059999999999 |
Significance: 0.0427593 |
DC;A;En |
Significance: 0.025087900000000003 |
Significance: 0.00384867 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0415211 |
Significance: 0.019532499999999998 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.0007183560000000001 |
Significance: 9.072649999999999e-05 |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00302712 |
Significance: 0.00566478 |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.0257342 |
Significance: 0.00725274 |
gamma_delta_TCR;A;CL |
Significance: 0.0209396 |
Significance: 0.0405875 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0577028 |
Significance: 0.023339500000000003 |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.057579099999999994 |
Significance: 0.05634580000000001 |
AML;D;En |
Significance: 0.000921288 |
Significance: 0.023579 |
NCR+ILC3;A;CL |
Significance: 0.03898630000000001 |
Significance: 0.0209236 |
416B_MP;CD34+;D;GEO |
Significance: 0.0357356 |
Significance: 0.00677785 |
NCR+ILC3+IL23;A;CL |
Significance: 0.0510344 |
Significance: 0.00777679 |
ILC2;A;CL |
Significance: 0.0358995 |
Significance: 0.051024 |
Th2_nippo;A;CL |
Significance: 0.0324723 |
Significance: 0.052389599999999995 |
NIH3T3_FBROBLST;D;En |
Significance: 0.0259618 |
Significance: 0.0208258 |
3T3-L1;FBRBLST;D;En |
Significance: 0.0378491 |
Significance: 0.011983 |
wES;LVR;E11.5;D.;En |
Significance: 0.00161518 |
Significance: 0.00345314 |
LNG;8wks;D;En |
Significance: 0.032228700000000006 |
Significance: 0.029908499999999998 |
ES;v6.5;A;GEO |
Significance: 0.00264605 |
Significance: 0.024858900000000003 |
Mammary_GLND;A;GEO |
Significance: 0.036470800000000005 |
Significance: 0.00532665 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00139474 |
Significance: 0.0135886 |
Adipose;D;En |
Significance: 0.0163518 |
Significance: 0.02373 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.05877759999999999 |
Significance: 0.013532599999999999 |
ILC1;A;GEO |
Significance: 0.027345099999999997 |
Significance: 0.044596 |
ILC2;A;GEO |
Significance: 0.0266855 |
Significance: 0.015541899999999999 |
ILC3;A;GEO |
Significance: 0.00943608 |
Significance: 0.0465414 |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.0228215 |
Significance: 0.05542709999999999 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.049842199999999996 |
Significance: 0.0166698 |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0021065000000000003 |
Significance: 0.00084697 |
416B_MP;CD34+;D;En |
Significance: 0.00331962 |
Significance: 0.000860625 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.027816200000000003 |
Significance: 0.057778199999999995 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.026870299999999996 |
Significance: 0.0464593 |
WHL_BRN;8wks;D;En |
Significance: 0.0430462 |
Significance: 0.0182188 |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.00134492 | Absent |
naiveCD8;A;CL |
Significance: 0.0471661 | Absent |
proB;A;CL |
Significance: 0.00191738 | Absent |
matureB;A;CL |
Significance: 0.0151061 | Absent |
plasmaB;A;CL |
Significance: 0.00234037 | Absent |
aB_LPS;A;CL |
Significance: 0.00432366 | Absent |
aB_LPS+IL4;A;CL |
Significance: 0.0513592 | Absent |
aB_LPS+IL21;A;CL |
Significance: 0.052351800000000004 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.0242294 | Absent |
Mast;A;CL |
Significance: 0.00239113 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00665317 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.012243299999999999 | Absent |
Tfh;A;CL |
Significance: 0.013455799999999999 | Absent |
aNonTfh;A;CL |
Significance: 0.047356199999999994 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.0196857 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00020203299999999998 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.046428199999999996 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0504435 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.030573000000000003 | Absent |
DP;A;CL |
Significance: 4.5732700000000003e-05 | Absent |
DP3a;A;CL |
Significance: 0.000475861 | Absent |
ES;E14;A;CL |
Significance: 2.3918e-05 | Absent |
LNG;A;CL |
Significance: 0.025827999999999997 | Absent |
Muscle;A;CL |
Significance: 4.19922e-05 | Absent |
Adipose;A;CL |
Significance: 0.0474949 | Absent |
PNCRS;A;CL |
Significance: 0.0580567 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.00434082 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.00598049 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.000461305 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.00133369 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.00112028 | Absent |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.0376151 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.0475594 | Absent |
ILC2precrsr;A;CL |
Significance: 0.0484017 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.018264700000000002 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.000462022 | Absent |
wCH12;A;CL |
Significance: 0.031143599999999997 | Absent |
CH12;med14;A;CL |
Significance: 0.019876400000000002 | Absent |
CLP;A;CL |
Significance: 0.00215382 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.05385830000000001 | Absent |
NTRPHL;A;GEO |
Significance: 0.00100183 | Absent |
ES;J1;A;CL |
Significance: 0.00232705 | Absent |
ES;E14;A;GEO |
Significance: 0.0118979 | Absent |
ES;F1216;A;GEO |
Significance: 0.00998947 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.00127324 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.054451 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.012710299999999999 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0463806 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.0532052 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.047761 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.039524300000000005 | Absent |
iNKT;A;GEO |
Significance: 0.010787799999999998 | Absent |
prePLSM_B;A;GEO |
Significance: 0.0444439 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.0025375 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.00150179 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.0303142 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0451972 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.035707199999999994 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0232558 | Absent |
NPC;F129;A;GEO |
Significance: 0.028355099999999998 | Absent |
NPC;G4;A;GEO |
Significance: 0.00248462 | Absent |
NPC;Ch13;A;GEO |
Significance: 0.03938030000000001 | Absent |
NPC;mE6;A;GEO |
Significance: 0.0597001 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00123843 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.00261019 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.000919873 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 5.11817e-05 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00018685700000000002 | Absent |
pMeg;A;En |
Significance: 0.0012229 | Absent |
MegEP;A;CL |
Significance: 0.00112449 | Absent |
pGMP;A;En |
Significance: 0.000777091 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 0.000622239 | Absent |
ES;D0;D;GEO |
Significance: 0.00010189799999999999 | Absent |
LVR;8wks;D;GEO |
Significance: 1.76079e-05 | Absent |
LNG;8wks;D;GEO |
Significance: 0.05347330000000001 | Absent |
apCD4Eff;D;GEO |
Significance: 0.0586818 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.000603773 | Absent |
ES;E14;D;En |
Significance: 0.000440984 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.0008444889999999999 | Absent |
KDNY;P0;D;En |
Significance: 0.0390176 | Absent |
KDNY;8wks;D;En |
Significance: 6.319349999999999e-06 | Absent |
LVR;8wks;D;En |
Significance: 0.00355495 | Absent |
LVR;P0;D;En |
Significance: 0.000255586 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.00320283 | Absent |
Heart;8wks;D;En |
Significance: 0.0411543 | Absent |
RTN;D1;D;En |
Significance: 0.0409622 | Absent |
CRBLM;D;En |
Significance: 0.0108104 | Absent |
Fr_BRN;P0;D;En |
Significance: 0.00313189 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.0454103 | Absent |
LRG_INTSTN;8wks;D;En |
Significance: 0.0427506 | Absent |
SKLTL_Muscle;8wks;D;En |
Significance: 0.00772505 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 0.000638295 | Absent |
Cell type | Modisco | Homer |
---|---|---|
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.029222500000000002 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.048884699999999996 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.05285890000000001 |
STMCH;P0;D;En | Absent |
Significance: 0.058441099999999996 |
aB;A;GEO | Absent |
Significance: 0.0543059 |
MTR_NRN_MN1;methyl3;D;En | Absent |
Significance: 0.0265284 |
SKN_EPTHL;A;GEO | Absent |
Significance: 0.0278303 |
BCK_SKN;A;GEO | Absent |
Significance: 0.0414744 |
ES;MEF;A;CL | Absent |
Significance: 0.0325938 |
Melanotrope;A;GEO | Absent |
Significance: 0.027834300000000003 |
Mammary_BptfKO;A;GEO | Absent |
Significance: 0.020317099999999998 |
placenta;A;CL | Absent |
Significance: 0.028970599999999996 |
BRN;OLFTRY_BLB;A;CL | Absent |
Significance: 0.0144019 |
BRN;FRNTL_CRTX;A;CL | Absent |
Significance: 0.0246058 |
ILC2_Nippo;A;CL | Absent |
Significance: 0.0133762 |
WHL_BRN;8wks;D;GEO | Absent |
Significance: 0.0228173 |
aB_LPS+IL4+Oligomycin_24h;A;CL | Absent |
Significance: 0.022491900000000002 |
FBRBLST;8wks;D;En | Absent |
Significance: 0.00991054 |
wCH12_drug;A;CL | Absent |
Significance: 0.008695999999999999 |
LNG;P0;D;En | Absent |
Significance: 0.047258999999999995 |
Heart;P0;D;En | Absent |
Significance: 0.020119799999999997 |
Muller;P12;D;En | Absent |
Significance: 0.00727652 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.038288199999999994 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.0569485 |
wES;Telenchephalon;D;En | Absent |
Significance: 0.036442800000000004 |