# Parameters
data_name = "Trp63"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:46:01,221 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Trp63: Motif: M09338_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Trp63: #2

Cell type	Modisco	Homer
Adipose;D;En	Pattern: metacluster_0/pattern_4 Significance: 6.07356e-08	Pattern: motif5.motif Significance: 8.999789999999999e-06
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 1.94297e-09	Pattern: motif9.motif Significance: 0.00444857

Unique Cell types only TF-MoDISco finds Trp63: #11

Cell type	Modisco	Homer
ES;ZhBTc4;1;D;GEO	Pattern: metacluster_1/pattern_22 Significance: 1.3331e-07	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_3 Significance: 6.90634e-09	Absent
Mammary_GLND;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 1.40928e-07	Absent
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.033963099999999996	Absent
CH12.LX;D;En	Pattern: metacluster_1/pattern_21 Significance: 3.1180800000000003e-07	Absent
ES;E14;A;CL	Pattern: metacluster_1/pattern_18 Significance: 0.014928499999999999	Absent
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_22 Significance: 3.73145e-08	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_20 Significance: 1.41964e-07	Absent
npES;ZHBTC4;doxyc;treat;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 4.47487e-07	Absent
Mammary_BptfKO;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 2.56825e-07	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_16 Significance: 0.0354774	Absent

No Cell types only Homer finds Trp63