In [1]:
# Parameters
data_name = "Prrx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:30:09,276 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Prrx1: Motif: M00431_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Prrx1: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00503938

Pattern: motif4.motif

Significance: 0.00824027

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00322653

Pattern: motif5.motif

Significance: 0.0413234

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00302253

Pattern: motif3.motif

Significance: 0.00218813

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.029881

Pattern: motif14.motif

Significance: 0.022596599999999998

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.016986900000000003

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0113635

Pattern: motif16.motif

Significance: 0.00986466

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00497263

Pattern: motif9.motif

Significance: 0.00314499

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0494977

Pattern: motif7.motif

Significance: 0.0394772

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.043206699999999994

Pattern: motif3.motif

Significance: 0.010600299999999998

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00188899

Pattern: motif13.motif

Significance: 0.00719931

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0117241

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0036217

Pattern: motif2.motif

Significance: 0.0019278

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00181216

Pattern: motif6.motif

Significance: 0.00669593

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00321646

Pattern: motif2.motif

Significance: 0.00237484

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00232032

Pattern: motif3.motif

Significance: 0.00230796

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0036969999999999998

Pattern: motif4.motif

Significance: 0.00310006

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0038116

Pattern: motif2.motif

Significance: 0.00161497

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.00476669

Pattern: motif10.motif

Significance: 0.00940302

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0476713

/

Pattern: metacluster_0/pattern_8

Significance: 0.00356381

Pattern: motif3.motif

Significance: 0.00416828

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00288396

Pattern: motif6.motif

Significance: 0.0112762

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.00433512

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00356192

Pattern: motif2.motif

Significance: 0.00218371

Unique Cell types only TF-MoDISco finds Prrx1: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00379006

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00680081

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00820188

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00567046

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.03337

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00631577

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0317732

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0134408

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0271925

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0492485

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00202336

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0341902

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00162683

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00132355

Absent
Unique Cell types only Homer finds Prrx1: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0369695

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00868799

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0230635

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0427584