In [1]:
# Parameters
data_name = "Foxk1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:02,163 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxk1: Motif: M00163_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxk1: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0147762

Pattern: motif9.motif

Significance: 0.03391690000000001

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0137124

Pattern: motif15.motif

Significance: 0.0360064

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.016193600000000002

Pattern: motif16.motif

Significance: 0.055052199999999996

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0193328

Pattern: motif5.motif

Significance: 0.00579451

LVR;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.00802024

Pattern: motif7.motif

Significance: 0.00487386

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00614551

Pattern: motif15.motif

Significance: 0.0439789

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0046488

Pattern: motif5.motif

Significance: 0.00872262

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.013739099999999999

Pattern: motif11.motif

Significance: 0.0208083

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.025721800000000003

Pattern: motif3.motif

Significance: 0.022812799999999998

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.019081599999999997

Pattern: motif4.motif

Significance: 0.0490463

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0322504

Pattern: motif6.motif

Significance: 0.036026499999999996

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0227737

Pattern: motif5.motif

Significance: 0.04560669999999999

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00947567

Pattern: motif15.motif

Significance: 0.035626599999999994

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0107071

Pattern: motif16.motif

Significance: 0.037080199999999994

Unique Cell types only TF-MoDISco finds Foxk1: #19

Cell typeModiscoHomer
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00280899

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.011617200000000001

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.0031195999999999997

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00237355

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.024436900000000004

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00732079

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.05657809999999999

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.030567900000000002

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0018107

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.0355407

/

Pattern: metacluster_1/pattern_21

Significance: 0.0545326

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0385212

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0341879

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.053051999999999995

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.0166263

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.0197552

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0369983

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00853811

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00258586

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00382466

Absent
No Cell types only Homer finds Foxk1