# Parameters
data_name = "Nkx2-5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:13,841 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nkx2-5: Motif: M00404_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx2-5: #1

Cell type	Modisco	Homer
LNG;8wks;D;En	Pattern: metacluster_0/pattern_9 Significance: 0.0124185	Pattern: motif4.motif Significance: 0.022596900000000003

Unique Cell types only TF-MoDISco finds Nkx2-5: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0451065	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0405764	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.057726	Absent
LNG;P0;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0157753	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0455219	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.0180489	Absent

No Cell types only Homer finds Nkx2-5