In [1]:
# Parameters
data_name = "Hnf4g"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:47,183 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hnf4g: Motif: M09307_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hnf4g: #12

Cell typeModiscoHomer
LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 2.0151299999999999e-07

Pattern: motif2.motif

Significance: 5.2365e-06

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.000576712

Pattern: motif18.motif

Significance: 0.0104677

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 1.60681e-07

Pattern: motif3.motif

Significance: 9.494680000000001e-08

STMCH;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 5.9392e-09

Pattern: motif11.motif

Significance: 1.6214300000000002e-07

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0159767

Pattern: motif10.motif

Significance: 0.00045817300000000003

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 5.32854e-07

Pattern: motif1.motif

Significance: 1.44995e-06

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0201946

Pattern: motif19.motif

Significance: 0.00745944

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 5.13798e-09

Pattern: motif5.motif

Significance: 1.17434e-06

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 1.8257099999999998e-08

Pattern: motif2.motif

Significance: 8.23962e-06

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.000580014

Pattern: motif20.motif

Significance: 0.00900121

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00201401

Pattern: motif12.motif

Significance: 0.00900684

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 2.1038999999999997e-08

Pattern: motif2.motif

Significance: 1.7267499999999998e-07

Unique Cell types only TF-MoDISco finds Hnf4g: #19

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0535365

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 1.4976199999999999e-05

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 6.63758e-08

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.036139

/

Pattern: metacluster_0/pattern_23

Significance: 0.000333324

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.000532514

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.00031161299999999997

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 7.20252e-05

/

Pattern: metacluster_0/pattern_21

Significance: 0.0005592759999999999

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00945062

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.058237199999999996

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 1.11984e-06

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0553677

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.050480300000000006

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.012948099999999999

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.017243

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00684787

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.000898855

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.000345294

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.0214039

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.053408300000000006

Absent
Unique Cell types only Homer finds Hnf4g: #1

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.00857332