# Parameters
data_name = "Gata1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Gata1: #20
| Cell type | Modisco | Homer |
|---|---|---|
| MegP;A;En |
Significance: 0.000103784 |
Significance: 0.024911700000000002 |
| pCMP;A;CL |
Significance: 0.00016917 |
Significance: 0.00991192 |
| LVR;P0;D;En |
Significance: 0.0064702 |
Significance: 0.00234959 |
| wES;LVR;E11.5;D.;En |
Significance: 0.00620419 |
Significance: 0.00503673 |
| SKN_EPTHL;A;GEO |
Significance: 0.00155963 |
Significance: 0.0312132 |
| Heart;P0;D;En |
Significance: 2.78694e-06 |
Significance: 0.0020721 |
| STMCH;P0;D;En |
Significance: 0.00121282 |
Significance: 0.0251106 |
| LNG_TRM_HSC;A;CL |
Significance: 0.00025077 |
Significance: 0.051117199999999995 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.000792672 |
Significance: 0.0223632 |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00707809 |
Significance: 0.0050154 |
| AML;AE9a;A;GEO |
Significance: 5.94553e-05 |
Significance: 0.000295324 |
| Mast;A;CL |
Significance: 0.00099155 |
Significance: 0.00248732 |
| BSPHL;A;CL |
Significance: 0.00148206 |
Significance: 0.00011339399999999999 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.000283486 |
Significance: 0.037240800000000004 |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.00699356 |
Significance: 0.030312000000000002 |
| 416B_MP;CD34+;D;En |
Significance: 8.967799999999999e-05 |
Significance: 0.0344644 |
| MEF.GATA-1-ER;D;En |
Significance: 0.00381027 |
Significance: 0.00790946 |
| MEL;D;En |
Significance: 0.00426752 |
Significance: 5.764490000000001e-06 |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0460508 |
Significance: 0.034352099999999997 |
| MegEP;A;CL |
Significance: 0.00107627 |
Significance: 0.00028121200000000003 |
Unique Cell types only TF-MoDISco finds Gata1: #51
| Cell type | Modisco | Homer |
|---|---|---|
| proB;A;CL |
Significance: 0.00162929 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0383265 | Absent |
| iNKT;A;GEO |
Significance: 0.00521405 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.0389591 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.00204854 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.058681899999999995 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 3.38707e-05 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 1.57349e-06 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.00713785 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.010352600000000002 | Absent |
| MN1;D;En |
Significance: 0.00482364 | Absent |
| aNonTfh;A;CL |
Significance: 0.0152119 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00222141 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 1.1220499999999999e-05 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0569477 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00307498 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 2.83025e-05 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0125785 | Absent |
| Erythroblast;A;CL |
Significance: 0.000589915 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.029999599999999998 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.054707000000000006 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.0006709110000000001 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0008159469999999999 | Absent |
| Heart;D;En |
Significance: 1.28072e-05 | Absent |
| placenta;A;CL |
Significance: 0.0175043 | Absent |
| EPP;A;En |
Significance: 0.00524317 | Absent |
| STMCH;A;CL |
Significance: 0.0343723 | Absent |
| pErythroblast;A;En |
Significance: 0.00300523 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.000373477 | Absent |
| LNG;8wks;D;GEO |
Significance: 3.97568e-06 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.000138805 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00186039 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00242891 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.019524 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.00258824 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.00226441 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00836593 | Absent |
| ILC2;A;CL |
Significance: 0.0131737 | Absent |
| Th2_nippo;A;CL |
Significance: 0.00556311 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0485449 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0533707 | Absent |
| LNG;8wks;D;En |
Significance: 8.48212e-06 | Absent |
| Heart;8wks;D;En |
Significance: 5.95086e-06 | Absent |
| Adipose;D;En |
Significance: 0.041373 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.00577611 | Absent |
| ILC2;A;GEO |
Significance: 0.00968452 | Absent |
| ILC3;A;GEO |
Significance: 0.018462400000000004 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.013819 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0309454 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0337319 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0398385 | Absent |
