# Parameters
data_name = "Mlxip"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Mlxip: #6
| Cell type | Modisco | Homer |
|---|---|---|
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0577565 |
Significance: 0.0407379 |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.0489014 |
Significance: 0.056453699999999996 |
| B_SPLND;A;GEO |
Significance: 0.0550773 |
Significance: 0.023086000000000002 |
| LNG;8wks;D;GEO |
Significance: 0.0532317 |
Significance: 0.0546135 |
| Hnd_BRN;P0;D;En |
Significance: 0.055489199999999995 |
Significance: 0.041237699999999995 |
| Heart;D;En |
Significance: 0.059226 |
Significance: 0.0386711 |
Unique Cell types only TF-MoDISco finds Mlxip: #122
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.050427099999999996 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0536624 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0555504 | Absent |
| B1_B;A;CL |
Significance: 0.057183300000000006 | Absent |
| plasmaB;A;CL |
Significance: 0.0585219 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0537062 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.0559956 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.05213480000000001 | Absent |
| Mast;A;CL |
Significance: 0.0596068 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.051409699999999996 | Absent |
| NTRPHL;A;CL |
Significance: 0.04810759999999999 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0585719 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.052281600000000004 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0559437 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.058016 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0566058 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.052286599999999996 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0546009 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.055824900000000004 | Absent |
| DC_BMD;A;CL |
Significance: 0.051038400000000005 | Absent |
| DP3a;A;CL |
Significance: 0.0483305 | Absent |
| ES;E14;A;CL |
Significance: 0.0552982 | Absent |
| ES;MEF;A;CL |
Significance: 0.054218499999999996 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0516757 | Absent |
| Adipose;A;CL |
Significance: 0.0546534 | Absent |
| placenta;A;CL |
Significance: 0.058339199999999994 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.048001199999999994 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0524264 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0464517 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.042329000000000006 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0435385 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0490742 | Absent |
| restingB;A;CL |
Significance: 0.049834300000000005 | Absent |
| aB;CD180;A;CL |
Significance: 0.047719199999999996 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.052001099999999995 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.052986 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0545135 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0522184 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0514411 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.051255600000000005 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0453575 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.0543665 | Absent |
| wCH12_drug;A;CL |
Significance: 0.05833819999999999 | Absent |
| CLP;A;CL |
Significance: 0.050416300000000004 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.054130700000000004 | Absent |
| ES;J1;A;CL |
Significance: 0.0475505 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.048446699999999995 | Absent |
| ILC1;A;GEO |
Significance: 0.0538144 | Absent |
| ILC3;A;GEO |
Significance: 0.0543259 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.057844799999999995 | Absent |
| iNKT;A;GEO |
Significance: 0.057911199999999996 | Absent |
| aB;A;GEO |
Significance: 0.058163 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0563621 | Absent |
| preB_BMD;A;GEO |
Significance: 0.053350800000000004 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0568168 | Absent |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.054750400000000005 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.0532361 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0548564 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.05776569999999999 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.052512800000000005 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0502455 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.059165199999999994 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.046893300000000006 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.056494600000000006 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.053764 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.049069699999999994 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0435661 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.041106199999999996 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0548567 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.0484606 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0371879 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.058347 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.047715600000000004 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.050901800000000004 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0559648 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0489152 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0579928 | Absent |
| MegP;A;En |
Significance: 0.0550805 | Absent |
| pCMP;A;CL |
Significance: 0.0586317 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.059605099999999994 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.055968 | Absent |
| ES;D0;D;GEO |
Significance: 0.048726 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.044927499999999995 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.0565894 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0530683 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.052569000000000005 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.047414599999999994 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.047378500000000004 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0448798 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.0556141 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0462437 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0540569 | Absent |
| KDNY;P0;D;En |
Significance: 0.048697000000000004 | Absent |
| KDNY;8wks;D;En |
Significance: 0.035758099999999994 | Absent |
| LVR;8wks;D;En |
Significance: 0.057149 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0585365 | Absent |
| LVR;P0;D;En |
Significance: 0.0557751 | Absent |
| LNG;8wks;D;En |
Significance: 0.038331699999999996 | Absent |
| LNG;P0;D;En |
Significance: 0.048226 | Absent |
| Heart;8wks;D;En |
Significance: 0.045438599999999996 | Absent |
| Heart;P0;D;En |
Significance: 0.052245299999999995 | Absent |
| RTN;D1;D;En |
Significance: 0.046321100000000004 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.053934 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0571044 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0411899 | Absent |
| Muller;P12;D;En |
Significance: 0.056007600000000005 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0490523 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0596355 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.0492812 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.0596395 | Absent |
| Md_BRN;D;En |
Significance: 0.0510172 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.0310594 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.056155 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.0546022 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0592337 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.059486300000000006 | Absent |
| STMCH;P0;D;En |
Significance: 0.0396681 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.0493474 | Absent |
| Spleen;8wks;D;En |
Significance: 0.052456600000000006 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0472851 | Absent |
| NIH3T3;D;En |
Significance: 0.054424400000000005 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0566491 | Absent |
Unique Cell types only Homer finds Mlxip: #10
| Cell type | Modisco | Homer |
|---|---|---|
| largeDPprecrsr;CD4+CD8+CD69-;A;CL | Absent |
Significance: 0.0420829 |
| wES;Fr_lmb;E11.5;D;En | Absent |
Significance: 0.0459766 |
| ES;F1216;A;GEO | Absent |
Significance: 0.0369668 |
| DC;A;En | Absent |
Significance: 0.0480696 |
| MCRPHG;A;CL | Absent |
Significance: 0.054835300000000003 |
| A20;B-lymphoma;D;En | Absent |
Significance: 0.010257299999999999 |
| DP;A;CL | Absent |
Significance: 0.039338599999999994 |
| ISP;A;CL | Absent |
Significance: 0.041265699999999995 |
| DC_LPS;6h;A;GEO | Absent |
Significance: 0.0456531 |
| wES;Md_BRN;E11.5;D;En | Absent |
Significance: 0.0475493 |
