# Parameters
data_name = "Gfi1b"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Gfi1b: #2
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.028076499999999997 |
Significance: 0.0342146 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.027213599999999998 |
Significance: 0.0161665 |
Unique Cell types only TF-MoDISco finds Gfi1b: #74
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.0427164 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.047594599999999994 | Absent |
| NK_SPLND;A;CL |
Significance: 0.030804500000000002 | Absent |
| proB;A;CL |
Significance: 0.0297553 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0402087 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0466219 | Absent |
| plasmaB;A;CL |
Significance: 0.044259 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0487916 | Absent |
| AML;D;En |
Significance: 0.041471 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0441341 | Absent |
| Mast;A;CL |
Significance: 0.024507499999999998 | Absent |
| BSPHL;A;CL |
Significance: 0.0393973 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.041863 | Absent |
| aNonTfh;A;CL |
Significance: 0.036359800000000005 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.023618200000000002 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0441764 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0524048 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.033518 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.051449699999999994 | Absent |
| DC_BMD;A;CL |
Significance: 0.0372328 | Absent |
| DP;A;CL |
Significance: 0.028719799999999997 | Absent |
| DP3a;A;CL |
Significance: 0.0212087 | Absent |
| DP3b;A;CL |
Significance: 0.0524587 | Absent |
| ES;MEF;A;CL |
Significance: 0.0384783 | Absent |
| aB;CD180;A;CL |
Significance: 0.0403636 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.05255800000000001 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.0269599 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.0366934 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.041699599999999996 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0358486 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0386653 | Absent |
| ILC1;A;CL |
Significance: 0.037803300000000005 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.045489499999999995 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.0262147 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.045924099999999995 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0255575 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.04706780000000001 | Absent |
| ILC1;A;GEO |
Significance: 0.0300644 | Absent |
| ILC2;A;GEO |
Significance: 0.049483099999999995 | Absent |
| ILC3;A;GEO |
Significance: 0.031713599999999995 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0456312 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0548732 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0318536 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0204511 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0356795 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.036206199999999994 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0561471 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.047054 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0121355 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.019530099999999998 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0262085 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0357055 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.053235000000000005 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.04178080000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.052686300000000005 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0324258 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.03895440000000001 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0518863 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.027669299999999997 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0385272 | Absent |
| iNKT;A;GEO |
Significance: 0.0382685 | Absent |
| preB_BMD;A;GEO |
Significance: 0.0395907 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0240215 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.039789599999999994 | Absent |
| pMeg;A;En |
Significance: 0.0388709 | Absent |
| pCMP;A;CL |
Significance: 0.0401857 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.031583099999999996 | Absent |
| DC;A;En |
Significance: 0.0467751 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.038796 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0363541 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.0564007 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.037825 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.05327230000000001 | Absent |
| Muller;P12;D;En |
Significance: 0.034307800000000006 | Absent |
