In [1]:
# Parameters
data_name = "Arx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,758 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Arx: Motif: M00467_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Arx: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0149611

Pattern: motif4.motif

Significance: 0.058388499999999996

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0138621

Pattern: motif5.motif

Significance: 0.030193900000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.016527700000000003

Pattern: motif3.motif

Significance: 0.0415274

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0350533

Pattern: motif3.motif

Significance: 0.0108561

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0441381

Pattern: motif6.motif

Significance: 0.0248518

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0559129

Pattern: motif9.motif

Significance: 0.0365302

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.050936300000000004

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0193873

Pattern: motif16.motif

Significance: 0.011452500000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00703136

Pattern: motif9.motif

Significance: 0.0069763

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.05757759999999999

Pattern: motif7.motif

Significance: 0.0394772

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0047433

Pattern: motif13.motif

Significance: 0.012866399999999998

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00811861

Pattern: motif2.motif

Significance: 0.00282453

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0126385

Pattern: motif6.motif

Significance: 0.011233799999999999

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.014412000000000001

Pattern: motif2.motif

Significance: 0.00361345

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.013121100000000002

Pattern: motif3.motif

Significance: 0.00353399

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.012840700000000002

Pattern: motif4.motif

Significance: 0.03830019999999999

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00960791

Pattern: motif2.motif

Significance: 0.00277144

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0137204

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00822864

Pattern: motif3.motif

Significance: 0.013723599999999999

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.005486199999999999

Pattern: motif6.motif

Significance: 0.0130058

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00881382

Pattern: motif14.motif

Significance: 0.028765499999999996

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00896283

Pattern: motif2.motif

Significance: 0.00301647

Unique Cell types only TF-MoDISco finds Arx: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0240777

/

Pattern: metacluster_0/pattern_25

Significance: 0.00156732

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00984593

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00632247

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00986625

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.051610300000000005

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399505

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0279938

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03421969999999999

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0317514

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.031964400000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0125934

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.033016199999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.014048699999999999

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0224276

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0273373

Absent
Unique Cell types only Homer finds Arx: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0487358

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0215532

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0228253

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.018005700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.010282799999999998