# Parameters
data_name = "Cdx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:38,190 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Cdx2: Motif: M09572_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Cdx2: #7

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0451065 / Pattern: metacluster_0/pattern_5 Significance: 0.00879788	Pattern: motif8.motif Significance: 0.00194904
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0142892 / Pattern: metacluster_0/pattern_3 Significance: 0.0214108	Pattern: motif5.motif Significance: 0.0512893
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00633628	Pattern: motif4.motif Significance: 0.0108932
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0493398	Pattern: motif2.motif Significance: 0.042759
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.053123699999999996	Pattern: motif15.motif Significance: 0.0432219
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.00622504	Pattern: motif3.motif Significance: 0.00807289
KDNY;P0;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0419537	Pattern: motif4.motif Significance: 0.00869523

Unique Cell types only TF-MoDISco finds Cdx2: #13

Cell type	Modisco	Homer
MPP;A;CL	Pattern: metacluster_1/pattern_21 Significance: 0.043833300000000006	Absent
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0133097	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.029044099999999996 / Pattern: metacluster_1/pattern_13 Significance: 0.0214378	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.039403	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0591143	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.025000099999999997	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.0412108	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.050535000000000004	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.0015519	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.058830999999999994	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0486434	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.027600200000000002	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.038614300000000004	Absent

No Cell types only Homer finds Cdx2