In [1]:
# Parameters
data_name = "Gata5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:57,571 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Gata5: Motif: M00167_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gata5: #15

Cell typeModiscoHomer
MegP;A;En

Pattern: metacluster_1/pattern_6

Significance: 3.62085e-06

Pattern: motif7.motif

Significance: 0.0394318

pCMP;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.000225305

Pattern: motif7.motif

Significance: 0.00588901

LVR;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 1.34402e-05

Pattern: motif13.motif

Significance: 0.00254251

wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_5

Significance: 0.000210425

Pattern: motif3.motif

Significance: 0.00820501

Heart;P0;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0018482

Pattern: motif13.motif

Significance: 0.0043076

STMCH;P0;D;En

Pattern: metacluster_1/pattern_17

Significance: 0.0226202

Pattern: motif13.motif

Significance: 0.047006

416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.000445988

Pattern: motif11.motif

Significance: 0.015191899999999998

Erythroid;Ter119+;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 9.56579e-06

Pattern: motif8.motif

Significance: 0.000688864

AML;AE9a;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00275473

Pattern: motif3.motif

Significance: 0.00040374

Mast;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.0352471

Pattern: motif6.motif

Significance: 0.0377097

BSPHL;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.0344851

Pattern: motif7.motif

Significance: 0.0297543

416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0033710000000000003

Pattern: motif12.motif

Significance: 0.015570600000000002

MEF.GATA-1-ER;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.000294541

Pattern: motif4.motif

Significance: 0.0313682

MEL;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.000135483

Pattern: motif4.motif

Significance: 6.20455e-07

MegEP;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.00107627

Pattern: motif2.motif

Significance: 0.024049099999999997

Unique Cell types only TF-MoDISco finds Gata5: #32

Cell typeModiscoHomer
proB;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.000189745

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_24

Significance: 0.000482711

Absent
ESNPHL_ex-vivo_BlbC;A;CL

Pattern: metacluster_0/pattern_18

Significance: 0.00273108

Absent
ESNPHL_SPLND_BlbCA;CL

Pattern: metacluster_0/pattern_15

Significance: 0.00485036

Absent
ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00623762

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.0549867

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00515322

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_26

Significance: 0.00157886

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00573815

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0120624

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0131626

Absent
Erythroblast;A;CL

Pattern: metacluster_1/pattern_9

Significance: 4.84705e-05

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_16

Significance: 0.036381300000000005

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_12

Significance: 0.0233996

Absent
Heart;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.00279696

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00831743

Absent
EPP;A;En

Pattern: metacluster_1/pattern_9

Significance: 1.34541e-05

Absent
pErythroblast;A;En

Pattern: metacluster_1/pattern_9

Significance: 0.00010396799999999999

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00912097

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_10

Significance: 8.987229999999999e-05

Absent
SHRT_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.000189291

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00943472

Absent
T_SPLND_blstCLTRD;CD4+;D;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.053014

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.015178899999999999

Absent
ILC2;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0326358

Absent
Th2_nippo;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0372356

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.00918431

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.00601254

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0336362

Absent
ILC2_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.019997400000000002

Absent
EP;c-kit+CD71+Ter119+;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.000195197

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000390596

Absent
Unique Cell types only Homer finds Gata5: #1

Cell typeModiscoHomer
MEL_Znc_di-cl;24h;D;EnAbsent

Pattern: motif6.motif

Significance: 0.019408900000000003