# Parameters
data_name = "Nkx2-4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:11,877 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nkx2-4: Motif: M00514_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx2-4: #1

Cell type	Modisco	Homer
LNG;8wks;D;En	Pattern: metacluster_0/pattern_9 Significance: 0.000139732	Pattern: motif4.motif Significance: 0.00152979

Unique Cell types only TF-MoDISco finds Nkx2-4: #2

Cell type	Modisco	Homer
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.000278306	Absent
LNG;P0;D;En	Pattern: metacluster_1/pattern_13 Significance: 9.79582e-05	Absent

No Cell types only Homer finds Nkx2-4