# Parameters
data_name = "Sox8"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:36:25,681 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Sox8: Motif: M00197_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox8: #2

Cell type	Modisco	Homer
ES;E14;A;CL	Pattern: metacluster_1/pattern_3 Significance: 0.013731899999999998	Pattern: motif7.motif Significance: 0.008808499999999999
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.00396967	Pattern: motif9.motif Significance: 0.00569875

Unique Cell types only TF-MoDISco finds Sox8: #12

Cell type	Modisco	Homer
ES;J1;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.00456128	Absent
ES;F1216;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.00935203	Absent
ES;129SV_Jae_C57BL6J;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0161208	Absent
ES;v6.5;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.015419899999999999	Absent
ES;ZhBTc4;2;D;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.0273041	Absent
ES;D0;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.0237088	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.019643599999999997	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0149608	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.011975399999999999	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_11 Significance: 0.0157993	Absent
ES;JM8.N4;Asynch;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.019904599999999998	Absent
ES;JM8.N4;Mitosis;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.042074	Absent

No Cell types only Homer finds Sox8