In [1]:
# Parameters
data_name = "Stat3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:39:57,563 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Stat3: Motif: M09645_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Stat3: #5

Cell typeModiscoHomer
iNKT;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.057298699999999994

Pattern: motif2.motif

Significance: 0.0521086

ILC1;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.057009199999999996

Pattern: motif2.motif

Significance: 0.04246830000000001

Tfh_mut;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0482914

Pattern: motif3.motif

Significance: 0.0570342

Teff;TCR_SV40-I_CD8+;D7;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0554097

Pattern: motif2.motif

Significance: 0.0318289

T_MLD;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0577971

Pattern: motif2.motif

Significance: 0.0547977

Unique Cell types only TF-MoDISco finds Stat3: #59

Cell typeModiscoHomer
naiveCD8;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.0528087

Absent
memT;CD4+;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0479513

Absent
Th17;CD4+;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.058082400000000006

Absent
NK_SPLND;A;CL

Pattern: metacluster_0/pattern_0

Significance: 0.0573189

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0596607

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0510911

Absent
aNonTfh;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0508471

Absent
aNonTfh_mut;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0512506

Absent
naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.044827

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0546962

Absent
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0511935

Absent
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.051172

Absent
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.045942000000000004

Absent
CD4+CD8-TCR+CD25+Foxp3-;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0570761

/

Pattern: metacluster_1/pattern_18

Significance: 0.045381

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0459872

/

Pattern: metacluster_1/pattern_14

Significance: 0.0417349

Absent
DP;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0427903

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 0.0585078

Absent
gamma_delta_TCR;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0515643

Absent
ILC2precrsr;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0380635

Absent
ILC2_Nippo;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0576058

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.056932500000000004

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.0375289

Absent
mem_precrsrT_SPLND;CD8+;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0589249

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.05833390000000001

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0516749

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.05476369999999999

Absent
ILC2;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.045762

Absent
ILC3;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.049111

Absent
ILC1_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0460274

Absent
ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.040327499999999995

Absent
naiveT;CD8+;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.05392280000000001

Absent
T_LCMV;CD8+;D33;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0345865

Absent
TEff_SPLND;CD8+;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0416451

Absent
Teff;TCR_SV40-I_CD8+;D5;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0590467

Absent
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0572922

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.051230700000000004

Absent
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.046613999999999996

Absent
B_SPLND;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.04367

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0455787

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.05879109999999999

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.04491830000000001

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_26

Significance: 0.0540101

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0545529

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.059275

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0354311

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.043651

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0453996

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0531706

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.05575069999999999

Absent
T_SPLND_blstCLTRD;CD4+;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.036131800000000006

Absent
apTreg;D;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.028527499999999997

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.05489730000000001

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0533429

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0599659

Absent
LVR;8wks;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.046898199999999994

Absent
LNG;P0;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0511024

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.059678300000000004

Absent
apThEff;CD4+;8wks;D;En.

Pattern: metacluster_1/pattern_4

Significance: 0.0588467

Absent
abTreg;CD4+_CD25+;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0558966

Absent
Unique Cell types only Homer finds Stat3: #3

Cell typeModiscoHomer
ES;MEF;A;CLAbsent

Pattern: motif8.motif

Significance: 0.0480464

T_LCMV;CD8+;D35;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.05617659999999999

MN1;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0580029