# Parameters
data_name = "Trp53"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:45:57,782 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Trp53: Motif: M03441_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Trp53: #1

Cell type	Modisco	Homer
Adipose;D;En	Pattern: metacluster_0/pattern_4 Significance: 1.6280799999999998e-07	Pattern: motif5.motif Significance: 0.000764785

Unique Cell types only TF-MoDISco finds Trp53: #11

Cell type	Modisco	Homer
ES;ZhBTc4;1;D;GEO	Pattern: metacluster_1/pattern_22 Significance: 1.34504e-08	Absent
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 4.19981e-08	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_3 Significance: 2.79237e-08	Absent
Mammary_GLND;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 3.56353e-07	Absent
CH12.LX;D;En	Pattern: metacluster_1/pattern_21 Significance: 1.23102e-05	Absent
ES;E14;A;CL	Pattern: metacluster_1/pattern_18 Significance: 0.0273166	Absent
immatureB_SPLND;CD43-_CD11b-;D;GEO	Pattern: metacluster_1/pattern_5 Significance: 0.057483000000000006	Absent
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_22 Significance: 7.28182e-07	Absent
ES;ZhBTc4;untreated;A;GEO	Pattern: metacluster_1/pattern_20 Significance: 6.49286e-11	Absent
npES;ZHBTC4;doxyc;treat;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 2.75413e-08	Absent
Mammary_BptfKO;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 9.68542e-07	Absent

Unique Cell types only Homer finds Trp53: #1

Cell type	Modisco	Homer
3T3-L1;D;En	Absent	Pattern: motif4.motif Significance: 0.0495036