In [1]:
# Parameters
data_name = "Vax1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:47:15,485 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Vax1: Motif: M00398_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Vax1: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000478719

Pattern: motif4.motif

Significance: 0.0529923

/

Pattern: motif8.motif

Significance: 0.0227303

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 4.2494200000000004e-05

Pattern: motif3.motif

Significance: 0.0276257

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0040579

Pattern: motif3.motif

Significance: 0.0204973

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00401665

Pattern: motif9.motif

Significance: 0.00678937

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00752755

Pattern: motif6.motif

Significance: 0.0117692

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00184254

Pattern: motif2.motif

Significance: 0.0037329999999999998

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00153648

Pattern: motif3.motif

Significance: 0.00353399

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.0170754

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00393692

Pattern: motif13.motif

Significance: 0.00999298

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0031146999999999998

Pattern: motif4.motif

Significance: 0.00746909

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00237015

Pattern: motif2.motif

Significance: 0.00307186

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00282468

Pattern: motif2.motif

Significance: 0.00275221

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0314099

Pattern: motif10.motif

Significance: 0.015903200000000003

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.00650548

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0242378

Pattern: motif13.motif

Significance: 0.011833100000000001

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00344815

Pattern: motif6.motif

Significance: 0.013499700000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0310311

Pattern: motif16.motif

Significance: 0.0147891

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00198644

Pattern: motif2.motif

Significance: 0.00310514

Unique Cell types only TF-MoDISco finds Vax1: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00439193

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0189683

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000192892

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.048713400000000004

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.04143019999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0021724

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 1.11138e-07

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0376209

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.043975099999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0168565

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000451611

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.05309880000000001

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00707871

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00444174

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00595947

Absent
Unique Cell types only Homer finds Vax1: #7

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0387977

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0493859

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0427586

SML_INTSTN;A;CLAbsent

Pattern: motif3.motif

Significance: 0.05466569999999999

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.012855200000000002

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.012446899999999999

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.022849500000000002