In [1]:
# Parameters
data_name = "Foxa1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:07:32,430 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxa1: Motif: M09103_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxa1: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.000883757

Pattern: motif9.motif

Significance: 0.03391690000000001

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0141082

/

Pattern: metacluster_0/pattern_13

Significance: 6.07052e-07

Pattern: motif7.motif

Significance: 2.67989e-05

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 1.3465899999999999e-06

/

Pattern: metacluster_1/pattern_18

Significance: 0.00881725

Pattern: motif16.motif

Significance: 0.048130599999999996

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 4.19064e-05

Pattern: motif5.motif

Significance: 0.00012275399999999998

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 4.5429900000000005e-06

Pattern: motif5.motif

Significance: 3.35055e-06

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000544313

Pattern: motif15.motif

Significance: 0.00144975

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000140244

Pattern: motif11.motif

Significance: 0.03981319999999999

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 1.0000800000000001e-05

/

Pattern: metacluster_1/pattern_10

Significance: 0.0157406

Pattern: motif3.motif

Significance: 1.42674e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.05807e-06

Pattern: motif4.motif

Significance: 0.00102088

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 1.03839e-05

Pattern: motif6.motif

Significance: 0.00511142

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 4.93783e-06

Pattern: motif5.motif

Significance: 3.66918e-05

Unique Cell types only TF-MoDISco finds Foxa1: #22

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.0006210909999999999

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00136872

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00391324

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000954848

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0010812999999999999

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 2.0849499999999997e-05

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000338387

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00113407

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 8.19535e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00011598700000000001

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0007435860000000001

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00581892

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0139483

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 2.6205700000000002e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 3.77115e-05

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00452065

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00480462

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.0046422

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00550444

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00059045

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00044196599999999996

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00234736

Absent
No Cell types only Homer finds Foxa1