In [1]:
# Parameters
data_name = "Hnf4a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:45,736 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hnf4a: Motif: M03426_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hnf4a: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0119057

Pattern: motif17.motif

Significance: 0.0379323

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00244774

Pattern: motif18.motif

Significance: 0.0486814

wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0493499

Pattern: motif8.motif

Significance: 0.0582553

LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 9.73221e-06

Pattern: motif2.motif

Significance: 0.000193694

wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0243348

Pattern: motif9.motif

Significance: 0.043267599999999996

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 6.361269999999999e-06

Pattern: motif3.motif

Significance: 3.55684e-05

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.05832419999999999

Pattern: motif10.motif

Significance: 0.017274599999999998

STMCH;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.000157873

Pattern: motif11.motif

Significance: 0.00295582

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 2.2724099999999998e-05

/

Pattern: metacluster_1/pattern_17

Significance: 0.044973900000000004

Pattern: motif1.motif

Significance: 3.95479e-05

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.015616399999999999

Pattern: motif19.motif

Significance: 0.035199

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 1.68885e-06

Pattern: motif5.motif

Significance: 1.0280999999999999e-05

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 1.01338e-06

Pattern: motif2.motif

Significance: 1.84286e-05

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0156007

Pattern: motif12.motif

Significance: 0.041847300000000004

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00248148

Pattern: motif20.motif

Significance: 0.0467207

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00165948

Pattern: motif15.motif

Significance: 0.03524

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 3.37716e-05

Pattern: motif2.motif

Significance: 0.000114734

Unique Cell types only TF-MoDISco finds Hnf4a: #16

Cell typeModiscoHomer
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 0.00019343

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 3.39094e-05

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0507052

/

Pattern: metacluster_0/pattern_23

Significance: 0.00177487

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0528722

/

Pattern: metacluster_0/pattern_24

Significance: 0.00293031

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.015868200000000002

/

Pattern: metacluster_0/pattern_15

Significance: 0.00274588

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0389891

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00072727

/

Pattern: metacluster_0/pattern_21

Significance: 0.00402169

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.048276

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00773234

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00142725

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.03506

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.017243

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.016527700000000003

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00376891

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.028119099999999998

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.059896000000000005

Absent
No Cell types only Homer finds Hnf4a