In [1]:
# Parameters
data_name = "Hes7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:02,686 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hes7: Motif: M01727_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hes7: #3

Cell typeModiscoHomer
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.036430699999999996

Pattern: motif8.motif

Significance: 0.0311732

BSPHL;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0478901

Pattern: motif9.motif

Significance: 0.0246353

preB;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.03436090000000001

Pattern: motif15.motif

Significance: 0.022744

Unique Cell types only TF-MoDISco finds Hes7: #31

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0431952

Absent
memT;CD4+;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.0385815

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.0379151

Absent
proB;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.0426829

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0446982

Absent
iNKT;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.039854

Absent
aB;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0515436

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.036835400000000004

Absent
DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.044505800000000005

Absent
ROD_PHT_RCPTR_RTN;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0396796

Absent
Tfh;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.0430006

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0305663

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0232373

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.054039800000000006

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.031281

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.056376499999999996

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.03711130000000001

Absent
Adipose;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.0425569

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.034602600000000004

Absent
DC;A;En

Pattern: metacluster_1/pattern_13

Significance: 0.053740199999999995

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.0355336

Absent
ILC2_Nippo;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.033032099999999995

Absent
CH12_QNTPLE;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.042958699999999996

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0398343

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.029543599999999996

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0327543

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0315495

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0480327

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.028883999999999996

Absent
ILC3;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0568312

Absent
ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.0368993

Absent
Unique Cell types only Homer finds Hes7: #15

Cell typeModiscoHomer
NRV;Eye-OPTC;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0459436

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif16.motif

Significance: 0.0243773

Th17;CD4+;A;CLAbsent

Pattern: motif14.motif

Significance: 0.024926300000000002

CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CLAbsent

Pattern: motif20.motif

Significance: 0.023009799999999997

CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;CAbsent

Pattern: motif21.motif

Significance: 0.022684

memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.023677200000000002

RTN;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.03867569999999999

wES;posterior;1;E8.5;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.045154599999999996

wES;RTN;E11.5;D;EnAbsent

Pattern: motif23.motif

Significance: 0.0294198

EP;c-kit+CD71+Ter119+;D;EnAbsent

Pattern: motif2.motif

Significance: 0.0448223

ES;MEF;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0217738

ILC2;A;CLAbsent

Pattern: motif9.motif

Significance: 0.030840899999999997

Mammary;A;CLAbsent

Pattern: motif10.motif

Significance: 0.0257841

ES;JM8.N4;Mitosis;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0580741

testis;A;CLAbsent

Pattern: motif8.motif

Significance: 0.0252135