In [1]:
# Parameters
data_name = "Meis1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:19:46,633 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Meis1: Motif: M09178_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Meis1: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000517797

Pattern: motif4.motif

Significance: 0.00902299

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000174213

Pattern: motif8.motif

Significance: 0.000758832

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 4.551130000000001e-06

Pattern: motif5.motif

Significance: 0.00607097

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.000577998

Pattern: motif6.motif

Significance: 0.0034907

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 6.32191e-06

Pattern: motif5.motif

Significance: 0.000148495

BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.022897900000000002

Pattern: motif8.motif

Significance: 0.0494985

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0592639

/

Pattern: metacluster_0/pattern_7

Significance: 0.00046827

Pattern: motif7.motif

Significance: 0.00695486

Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 1.61512e-05

Pattern: motif17.motif

Significance: 0.049802

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 9.76554e-09

/

Pattern: metacluster_0/pattern_5

Significance: 0.0493398

Pattern: motif2.motif

Significance: 1.63125e-07

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 8.52663e-07

Pattern: motif15.motif

Significance: 5.5012399999999995e-05

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 1.24184e-06

Pattern: motif4.motif

Significance: 5.7003e-05

Unique Cell types only TF-MoDISco finds Meis1: #21

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 1.5189600000000001e-06

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00892313

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.000317895

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0021165

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0258233

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 3.4153e-05

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0452983

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.00685179

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00090115

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00613966

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.000652414

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00173746

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0313401

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.0245558

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.03993680000000001

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 6.9313e-06

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 1.24703e-05

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 2.82629e-05

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0009801039999999999

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 3.26835e-07

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0289074

Absent
Unique Cell types only Homer finds Meis1: #6

Cell typeModiscoHomer
LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.0567991

NPC;mE6;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.051936800000000005

G_NRN_P;A;GEOAbsent

Pattern: motif5.motif

Significance: 0.052069399999999995

Muscle;A;CLAbsent

Pattern: motif19.motif

Significance: 0.0512572

wES;Md_BRN;E14.4;D;EnAbsent

Pattern: motif17.motif

Significance: 0.0420792

wES;Md_BRN;E11.5;D;EnAbsent

Pattern: motif20.motif

Significance: 0.050535500000000004