In [1]:
# Parameters
data_name = "Tfap2e"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:44:48,200 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tfap2e: Motif: M00114_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tfap2e: #2

Cell typeModiscoHomer
Adipose;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.013595300000000001

Pattern: motif10.motif

Significance: 0.00244313

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0144319

Pattern: motif13.motif

Significance: 0.0422221

Unique Cell types only TF-MoDISco finds Tfap2e: #13

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.047535

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_25

Significance: 0.00143791

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0186657

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00428449

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0208825

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0163231

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00103843

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_20

Significance: 0.00368479

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00687294

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.00406217

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00738062

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.0126

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.014560499999999999

Absent
No Cell types only Homer finds Tfap2e