In [1]:
# Parameters
data_name = "Dlx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:14,147 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Dlx2: Motif: M03254_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Dlx2: #17

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00503938

Pattern: motif4.motif

Significance: 0.0463777

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00722115

Pattern: motif3.motif

Significance: 0.028729

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0169049

Pattern: motif9.motif

Significance: 0.0344176

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052355200000000005

Pattern: motif3.motif

Significance: 0.0195304

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0382593

Pattern: motif6.motif

Significance: 0.0451541

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0328028

Pattern: motif2.motif

Significance: 0.023566800000000002

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.029819599999999998

Pattern: motif3.motif

Significance: 0.0245449

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.036103699999999996

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.03448590000000001

Pattern: motif13.motif

Significance: 0.0404707

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0316332

Pattern: motif4.motif

Significance: 0.026146199999999998

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0165584

Pattern: motif2.motif

Significance: 0.035774400000000005

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0107316

Pattern: motif2.motif

Significance: 0.0340594

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0517366

Pattern: motif10.motif

Significance: 0.0456136

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0454943

Pattern: motif3.motif

Significance: 0.0513768

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.03447

Pattern: motif6.motif

Significance: 0.0535889

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0207458

Pattern: motif14.motif

Significance: 0.0438904

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0101549

Pattern: motif2.motif

Significance: 0.0436315

Unique Cell types only TF-MoDISco finds Dlx2: #8

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.0275356

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00615258

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.029876

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00247421

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0317514

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.025908499999999998

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0437603

Absent
Unique Cell types only Homer finds Dlx2: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.058748

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0580236

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0300659

BL_CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.03988219999999999

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0368874

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.0451021