In [1]:
# Parameters
data_name = "Phox2b"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:57,829 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Phox2b: Motif: M00401_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Phox2b: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00854409

Pattern: motif4.motif

Significance: 0.0201361

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0044688

Pattern: motif3.motif

Significance: 0.015530200000000003

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.029881

Pattern: motif14.motif

Significance: 0.022596599999999998

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.014482499999999999

Pattern: motif13.motif

Significance: 0.008159399999999999

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.010276100000000002

Pattern: motif16.motif

Significance: 0.00938426

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00578856

Pattern: motif9.motif

Significance: 0.00584502

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0451339

Pattern: motif7.motif

Significance: 0.0580236

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0406069

Pattern: motif3.motif

Significance: 0.00970448

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00207067

Pattern: motif13.motif

Significance: 0.00719931

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0117241

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00481806

Pattern: motif2.motif

Significance: 0.00190072

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00418987

Pattern: motif6.motif

Significance: 0.00669593

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00436974

Pattern: motif2.motif

Significance: 0.00237484

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00362901

Pattern: motif3.motif

Significance: 0.00186492

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00434235

Pattern: motif4.motif

Significance: 0.00398118

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00442223

Pattern: motif2.motif

Significance: 0.00104901

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.00738048

Pattern: motif10.motif

Significance: 0.00870718

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00356381

Pattern: motif3.motif

Significance: 0.0121884

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00392437

Pattern: motif6.motif

Significance: 0.0112762

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011123000000000001

Pattern: motif14.motif

Significance: 0.00433512

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00526253

Pattern: motif2.motif

Significance: 0.00218371

Unique Cell types only TF-MoDISco finds Phox2b: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.031989699999999996

/

Pattern: metacluster_0/pattern_25

Significance: 0.00285935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00680081

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00501703

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00720191

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00281148

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0357167

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00339506

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0560575

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0317732

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00960556

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0159278

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00585279

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00147115

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00278134

Absent
Unique Cell types only Homer finds Phox2b: #2

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00808331

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0230635