In [1]:
# Parameters
data_name = "Foxl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:04,057 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxl1: Motif: M00164_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxl1: #10

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00181317

Pattern: motif9.motif

Significance: 0.0597154

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0190737

/

Pattern: metacluster_0/pattern_13

Significance: 0.00192257

Pattern: motif7.motif

Significance: 0.00295404

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000870563

Pattern: motif5.motif

Significance: 0.00758678

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000242533

Pattern: motif5.motif

Significance: 0.000457184

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00208709

Pattern: motif15.motif

Significance: 0.015300999999999999

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00016419099999999997

Pattern: motif11.motif

Significance: 0.0263232

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0020675999999999997

/

Pattern: metacluster_1/pattern_10

Significance: 0.042187999999999996

Pattern: motif3.motif

Significance: 0.00286029

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.000560697

Pattern: motif4.motif

Significance: 0.0212391

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.000795433

Pattern: motif6.motif

Significance: 0.0273186

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00112879

Pattern: motif5.motif

Significance: 0.0047364

Unique Cell types only TF-MoDISco finds Foxl1: #23

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00149602

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0131635

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00624322

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00327143

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00197377

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0006673310000000001

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00123294

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00359564

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.000521592

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00194449

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00136594

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00176676

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.007459100000000001

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.00426286

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00450556

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.016029599999999998

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.031791700000000006

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00432285

/

Pattern: metacluster_1/pattern_21

Significance: 0.0440163

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00424671

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.000649339

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0008137719999999999

/

Pattern: metacluster_1/pattern_18

Significance: 0.033062400000000006

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00168554

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00243957

Absent
No Cell types only Homer finds Foxl1