In [1]:
# Parameters
data_name = "Rorc"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:32:18,809 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Rorc: Motif: M09324_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Rorc: #8

Cell typeModiscoHomer
RTN;D1;D;En

Pattern: metacluster_0/pattern_10

Significance: 1.2060399999999999e-05

Pattern: motif8.motif

Significance: 0.00103797

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.041621899999999996

Pattern: motif21.motif

Significance: 0.011368799999999998

CRBLM;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0039347

Pattern: motif13.motif

Significance: 0.00531965

ILC3;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00011268299999999999

Pattern: motif10.motif

Significance: 0.000834333

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 9.27174e-05

Pattern: motif10.motif

Significance: 3.2241200000000003e-06

ILC3_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 8.23942e-05

Pattern: motif8.motif

Significance: 0.000317083

NCR+ILC3;A;CL

Pattern: metacluster_1/pattern_4

Significance: 1.61124e-05

Pattern: motif5.motif

Significance: 0.000182305

Muller;P12;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.058364599999999996

Pattern: motif9.motif

Significance: 0.0486905

Unique Cell types only TF-MoDISco finds Rorc: #26

Cell typeModiscoHomer
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0394308

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_28

Significance: 0.0211462

Absent
DC_LPS;6h;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.030802999999999997

Absent
ROD_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00714618

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00355521

/

Pattern: metacluster_1/pattern_18

Significance: 0.0317996

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00160151

Absent
Tfh_mut;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0445131

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0528722

Absent
MCRPHG;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.023193000000000002

Absent
DP;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00335236

Absent
ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00329836

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00042695

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0493394

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.058991499999999995

Absent
pMeg;A;En

Pattern: metacluster_1/pattern_16

Significance: 0.0280117

/

Pattern: metacluster_1/pattern_20

Significance: 0.00613491

Absent
apTreg;D;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0248876

Absent
ILC2_Nippo;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00241243

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_20

Significance: 8.155449999999999e-05

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_9

Significance: 0.000421017

/

Pattern: metacluster_1/pattern_19

Significance: 0.0378399

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000507975

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0217903

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.051454

Absent
ILC1;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 3.2546500000000004e-05

Absent
ILC1_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00117253

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.04277569999999999

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_16

Significance: 3.45473e-05

Absent
Unique Cell types only Homer finds Rorc: #3

Cell typeModiscoHomer
Th17;CD4+;A;CLAbsent

Pattern: motif16.motif

Significance: 0.0462795

ILC2;A;CLAbsent

Pattern: motif17.motif

Significance: 0.0577215

Muscle;A;CLAbsent

Pattern: motif9.motif

Significance: 0.0258219