# Parameters
data_name = "Irf8"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:14:24,532 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.000214571 |
Significance: 7.924479999999999e-05 |
| memT;CD4+;A;CL |
Significance: 0.0159813 |
Significance: 0.00155225 |
| proB;A;CL |
Significance: 3.36543e-05 |
Significance: 0.000240226 |
| preB;A;CL |
Significance: 0.000104466 |
Significance: 0.000294942 |
| immatureB;A;CL |
Significance: 0.00014596799999999998 |
Significance: 0.000163756 |
| matureB;A;CL |
Significance: 0.000124081 |
Significance: 0.000278833 |
| MZ_B;A;CL |
Significance: 6.32532e-10 |
Significance: 7.58463e-05 |
| B1_B;A;CL |
Significance: 6.98555e-05 |
Significance: 0.000282943 |
| GC_B;A;CL |
Significance: 2.9916e-05 |
Significance: 9.776950000000001e-05 |
| plasmaB;A;CL |
Significance: 0.000306518 |
Significance: 0.0182331 |
| aB_LPS;A;CL |
Significance: 5.12594e-05 |
Significance: 0.032167799999999996 |
| aB_LPS+IL4;A;CL |
Significance: 0.00011544700000000001 |
Significance: 0.0219815 |
| aB_LPS+IL21;A;CL |
Significance: 5.60042e-05 |
Significance: 0.0530762 |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00010268299999999999 |
Significance: 0.026845400000000002 |
| aB_CD40+IL4;A;CL |
Significance: 0.000179863 |
Significance: 0.0400785 |
| BSPHL;A;CL |
Significance: 0.000113826 |
Significance: 0.00959109 |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.000219069 |
Significance: 0.026451 |
| NTRPHL;A;CL |
Significance: 4.5818699999999996e-05 |
Significance: 0.023762400000000003 |
| Tfh;A;CL |
Significance: 0.0184028 |
Significance: 0.0232606 |
| Tfh_mut;A;CL |
Significance: 0.00394488 |
Significance: 0.022623400000000002 |
| aNonTfh_mut;A;CL |
Significance: 0.0231718 |
Significance: 0.0235096 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0549592 |
Significance: 0.0210502 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.018831599999999997 |
Significance: 0.0217172 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0231204 |
Significance: 0.00042024699999999995 |
| DC_BMD;A;CL |
Significance: 2.1189800000000002e-08 |
Significance: 4.242130000000001e-12 |
| MCRPHG;A;CL |
Significance: 3.9634300000000004e-07 |
Significance: 4.85947e-09 |
| DP3a;A;CL |
Significance: 0.0179988 |
Significance: 0.058087 |
| DP3b;A;CL |
Significance: 0.0202269 |
Significance: 0.0261444 |
| restingB;A;CL |
Significance: 0.00021223900000000003 |
Significance: 3.06436e-09 |
| aB;CD180;A;CL |
Significance: 9.31667e-05 |
Significance: 2.35479e-05 |
| LNG_TRM_HSC;A;CL |
Significance: 0.000575522 |
Significance: 0.012703299999999999 |
| SHRT_TRM_HSC;A;CL |
Significance: 0.00023936700000000001 |
Significance: 0.00030523299999999997 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.000158701 |
Significance: 8.663840000000001e-05 |
| ILC2precrsr;A;CL |
Significance: 0.012934999999999999 |
Significance: 0.0463577 |
| ILC2_Nippo;A;CL |
Significance: 0.020297700000000002 |
Significance: 0.0599499 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.015500700000000001 |
Significance: 0.00277088 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 3.55832e-07 |
Significance: 0.0518461 |
| CH12_QNTPLE;A;CL |
Significance: 0.000183437 |
Significance: 0.000562719 |
| wCH12;A;CL |
Significance: 4.3903e-06 |
Significance: 0.000432496 |
| wCH12_drug;A;CL |
Significance: 9.27981e-09 |
Significance: 0.000494737 |
| CLP;A;CL |
Significance: 0.000153971 |
Significance: 2.15879e-05 |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.018356400000000002 |
Significance: 0.00565644 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.021913 |
Significance: 0.00664201 |
| NTRPHL;A;GEO |
Significance: 0.0007277960000000001 |
Significance: 0.050125 |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.013506299999999999 |
Significance: 0.026561599999999998 |
| ILC2;A;GEO |
Significance: 0.0179063 |
Significance: 0.00992112 |
| ILC3;A;GEO |
Significance: 0.0142762 |
Significance: 0.00222923 |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0213468 |
Significance: 0.0312804 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.021646799999999997 |
Significance: 0.022537900000000003 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.024566400000000002 |
Significance: 0.031291900000000004 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.034862699999999996 |
Significance: 0.027924900000000002 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.02436 |
Significance: 0.029153199999999997 |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.01759 |
Significance: 0.0435642 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0167223 |
Significance: 0.000461982 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0200313 |
Significance: 0.0227465 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.022193 |
Significance: 0.00358123 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.030847000000000003 |
Significance: 0.0324594 |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0211266 |
Significance: 0.00036559300000000005 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00639808 |
Significance: 0.00676297 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0144954 |
Significance: 0.00137246 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0137637 |
Significance: 0.0449413 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 1.26831e-06 |
Significance: 0.031518 |
| iNKT;A;GEO |
Significance: 0.0212525 |
Significance: 0.0191461 |
| aB;A;GEO |
Significance: 0.000165088 |
Significance: 3.85495e-05 |
| prePLSM_B;A;GEO |
Significance: 7.51702e-05 |
Significance: 6.46107e-05 |
| B_SPLND;A;GEO |
Significance: 0.00012958299999999998 |
Significance: 0.000545579 |
| preB_BMD;A;GEO |
Significance: 3.69449e-06 |
Significance: 4.0595e-05 |
| B;B220_CD43;A;GEO |
Significance: 0.0104016 |
Significance: 0.00025135 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 3.95063e-05 |
Significance: 0.000170969 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 4.613399999999999e-07 |
Significance: 3.5207300000000004e-06 |
| AML;AE9a;A;GEO |
Significance: 0.000551511 |
Significance: 0.00034020400000000004 |
| DC_LPS;6h;A;GEO |
Significance: 1.02924e-09 |
Significance: 1.14896e-08 |
| DC_LPS;2h;A;GEO |
Significance: 3.44466e-09 |
Significance: 6.07265e-08 |
| DC_pBMD;A;GEO |
Significance: 4.18821e-06 |
Significance: 1.09479e-09 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0012893 |
Significance: 3.4799000000000003e-05 |
| pMeg;A;En |
Significance: 4.84319e-07 |
Significance: 2.38403e-07 |
| MegP;A;En |
Significance: 2.80975e-05 |
Significance: 2.7368e-06 |
| pCMP;A;CL |
Significance: 5.02096e-05 |
Significance: 2.4743499999999998e-05 |
| DC_LPS;4h;A;En |
Significance: 3.43853e-06 |
Significance: 3.4277099999999995e-08 |
| pGMP;A;En |
Significance: 1.49221e-07 |
Significance: 7.26491e-09 |
| DC;A;En |
Significance: 8.8243e-07 |
Significance: 2.16243e-07 |
| Treg;CD4+_CD25+;D;GEO |
Significance: 4.02711e-05 |
Significance: 0.00289851 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 7.37669e-07 |
Significance: 0.00133733 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00160857 |
Significance: 0.0328382 |
| LNG;8wks;D;En |
Significance: 0.0026544 |
Significance: 0.00018408 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00010604700000000001 |
Significance: 0.0243519 |
| 416B_MP;CD34+;D;En |
Significance: 0.00168157 |
Significance: 0.0351689 |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 4.82828e-09 |
Significance: 0.000138799 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.00011009999999999999 |
Significance: 0.0005817369999999999 |
| Spleen;8wks;D;En |
Significance: 0.00018062099999999998 |
Significance: 0.0005496419999999999 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00127049 |
Significance: 0.00703635 |
| A20;B-lymphoma;D;En |
Significance: 3.60871e-15 |
Significance: 0.000264211 |
| AML;D;En |
Significance: 1.3604200000000001e-05 |
Significance: 1.17986e-06 |
| CH12.LX;D;En |
Significance: 9.781419999999999e-07 |
Significance: 0.000754815 |
| MEF.GATA-1-ER;D;En |
Significance: 1.65683e-06 |
Significance: 3.50427e-05 |
| MEL;D;En |
Significance: 1.13899e-06 |
Significance: 4.37432e-09 |
| MEL_Znc_di-cl;24h;D;En |
Significance: 2.60884e-07 |
Significance: 9.53449e-10 |
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.00897257 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.00976168 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0162705 | Absent |
| Mast;A;CL |
Significance: 9.28044e-05 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.000285385 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.000164418 | Absent |
| aNonTfh;A;CL |
Significance: 0.0242027 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.017682299999999998 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0201773 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0412745 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.020929800000000002 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.022836900000000004 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.024800299999999997 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.017347 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0240158 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.030765300000000002 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.030644900000000003 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0197068 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0167075 | Absent |
| Erythroblast;A;CL |
Significance: 8.83391e-05 | Absent |
| DP;A;CL |
Significance: 0.047997500000000005 | Absent |
| ISP;A;CL |
Significance: 0.013343299999999999 | Absent |
| ES;MEF;A;CL |
Significance: 0.017501 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.053125599999999995 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00148716 | Absent |
| LNG;A;CL |
Significance: 0.00037065800000000006 | Absent |
| Muscle;A;CL |
Significance: 0.0431204 | Absent |
| Heart;D;En |
Significance: 0.0289637 | Absent |
| Adipose;A;CL |
Significance: 0.0130058 | Absent |
| Mammary;A;CL |
Significance: 0.00228161 | Absent |
| Adrenal;A;CL |
Significance: 0.05972380000000001 | Absent |
| placenta;A;CL |
Significance: 2.4670999999999998e-05 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00010378799999999999 | Absent |
| STMCH;A;CL |
Significance: 7.79919e-05 | Absent |
| PNCRS;A;CL |
Significance: 0.0460809 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.05294069999999999 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.024728200000000002 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.007699899999999999 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.052477800000000005 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0413596 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.044075800000000005 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.000537676 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.00629116 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.017235499999999997 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.028052499999999998 | Absent |
| ILC1;A;CL |
Significance: 0.0195791 | Absent |
| ILC2;A;CL |
Significance: 6.03031e-05 | Absent |
| Th2_nippo;A;CL |
Significance: 0.024741700000000002 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.000470306 | Absent |
| CH12;med14;A;CL |
Significance: 3.35677e-05 | Absent |
| Mammary_GLND;A;GEO |
Significance: 1.2420999999999998e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00189609 | Absent |
| ILC1;A;GEO |
Significance: 0.0156314 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0211976 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 7.41382e-06 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0187807 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.018599099999999997 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.024263099999999996 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0202858 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.035563 | Absent |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0389483 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0227955 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0168036 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0220198 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0530788 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.00250866 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.000200384 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 8.44723e-05 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0385166 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.000359557 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.000198923 | Absent |
| NPC;G4;A;GEO |
Significance: 0.00013277799999999998 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.044885800000000003 | Absent |
| Corticotrope;A;GEO |
Significance: 0.000159075 | Absent |
| Melanotrope;A;GEO |
Significance: 0.00118279 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.00016195899999999999 | Absent |
| EPP;A;En |
Significance: 0.056481500000000004 | Absent |
| MegEP;A;CL |
Significance: 0.00969014 | Absent |
| pErythroblast;A;En |
Significance: 0.0490515 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.000158288 | Absent |
| LVR;8wks;D;GEO |
Significance: 3.18621e-05 | Absent |
| LNG;8wks;D;GEO |
Significance: 2.5394e-05 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 6.8002e-05 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0152525 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0338536 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0237626 | Absent |
| apTreg;D;GEO |
Significance: 0.00355199 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0321597 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 7.003139999999999e-06 | Absent |
| KDNY;P0;D;En |
Significance: 0.0220571 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0509412 | Absent |
| LVR;8wks;D;En |
Significance: 4.11335e-05 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.011000399999999999 | Absent |
| LVR;P0;D;En |
Significance: 0.000157992 | Absent |
| LNG;P0;D;En |
Significance: 0.0136315 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.033887400000000005 | Absent |
| Heart;8wks;D;En |
Significance: 0.0249399 | Absent |
| Heart;P0;D;En |
Significance: 0.0209194 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 9.92307e-06 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.012011399999999998 | Absent |
| apTreg;8wk;D;En |
Significance: 0.00983152 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 3.77373e-05 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0461728 | Absent |
| Muller;P12;D;En |
Significance: 0.000895591 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.00607883 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.040466 | Absent |
| wES;limb;E14.5;D;En |
Significance: 0.0441533 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.0291803 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0107759 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.0489301 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.030447000000000002 | Absent |
| STMCH;P0;D;En |
Significance: 0.0506707 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.00239276 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 7.38441e-05 | Absent |
| NIH3T3;D;En |
Significance: 3.81439e-05 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 5.83078e-05 | Absent |
| MN1;D;En |
Significance: 0.000196931 | Absent |
| 3T3-L1;D;En |
Significance: 1.7948e-06 | Absent |