# Parameters
data_name = "Pax4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:15,896 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pax4: Motif: M00542_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pax4: #15

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_8 Significance: 0.00362623	Pattern: motif3.motif Significance: 0.026474
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00578856	Pattern: motif9.motif Significance: 0.0355055
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0139065	Pattern: motif6.motif Significance: 0.0332814
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00492496	Pattern: motif2.motif Significance: 0.015406200000000002
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00386711	Pattern: motif3.motif Significance: 0.0192583
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0141509	Pattern: motif13.motif Significance: 0.0366471
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.00434235	Pattern: motif4.motif Significance: 0.025283299999999998
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.00462161	Pattern: motif2.motif Significance: 0.0314047
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.00473483	Pattern: motif2.motif Significance: 0.02097
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.0541751	Pattern: motif10.motif Significance: 0.0249115
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0175571	Pattern: motif14.motif Significance: 0.0109696
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.03321180000000001	Pattern: motif13.motif Significance: 0.0206239
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.00402398	Pattern: motif6.motif Significance: 0.0285934
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.013031899999999999	Pattern: motif16.motif Significance: 0.015423599999999999
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.00555352	Pattern: motif2.motif Significance: 0.0352959

Unique Cell types only TF-MoDISco finds Pax4: #14

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.0164013	Absent
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00739248	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00581568	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00522011	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.0324214	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0330337	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.00951863	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.0172025	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.011641	Absent
ES;E14;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0502854	Absent
NPC;G4;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0445645	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.00550927	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.00854929	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.00749776	Absent

Unique Cell types only Homer finds Pax4: #6

Cell type	Modisco	Homer
RTN;A;GEO	Absent	Pattern: motif2.motif Significance: 0.0431329
MTR_NRN_MN1;methyl3;D;En	Absent	Pattern: motif6.motif Significance: 0.04732619999999999
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.0299255
ROD_PHT_RCPTR_RTN;A;GEO	Absent	Pattern: motif3.motif Significance: 0.0529711
GCN_PHT_RCPTR;A;GEO	Absent	Pattern: motif2.motif Significance: 0.051000800000000006
CN_PHT_RCPTR;A;GEO	Absent	Pattern: motif8.motif Significance: 0.019328599999999998