In [1]:
# Parameters
data_name = "Myf5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:21:22,079 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Myf5: Motif: M09463_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Myf5: #25

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.058332600000000005

Pattern: motif5.motif

Significance: 0.000679789

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00427245

Pattern: motif12.motif

Significance: 0.0528342

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.017175299999999998

Pattern: motif5.motif

Significance: 0.00109481

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.000355754

Pattern: motif15.motif

Significance: 0.000152309

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00694945

Pattern: motif12.motif

Significance: 0.000111998

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00280753

Pattern: motif15.motif

Significance: 0.0241832

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000807711

Pattern: motif10.motif

Significance: 0.0042811

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.0290149

Pattern: motif22.motif

Significance: 0.023848599999999998

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.000304111

Pattern: motif9.motif

Significance: 0.0211859

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0013341

Pattern: motif9.motif

Significance: 9.745850000000001e-05

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00187353

Pattern: motif11.motif

Significance: 0.014593700000000001

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0151567

Pattern: motif13.motif

Significance: 0.0548271

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0392142

Pattern: motif10.motif

Significance: 0.014336700000000003

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.019476

Pattern: motif9.motif

Significance: 0.00294631

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0110436

Pattern: motif13.motif

Significance: 0.00599209

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00684333

Pattern: motif11.motif

Significance: 0.015268899999999998

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.050495

Pattern: motif5.motif

Significance: 0.0189871

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00190421

Pattern: motif19.motif

Significance: 0.013110499999999999

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00769389

Pattern: motif13.motif

Significance: 0.0144249

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.042651999999999995

Pattern: motif15.motif

Significance: 0.0144731

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0243298

Pattern: motif18.motif

Significance: 0.000166002

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0493116

Pattern: motif13.motif

Significance: 0.0155748

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0164044

Pattern: motif2.motif

Significance: 0.012634200000000002

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0198236

Pattern: motif16.motif

Significance: 0.0160287

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00120752

Pattern: motif4.motif

Significance: 0.00242625

Unique Cell types only TF-MoDISco finds Myf5: #33

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0138357

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.00971706

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00112034

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00200356

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.000263041

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0192541

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.000332427

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0482843

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00711641

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000133837

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00139833

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.000900083

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00303145

Absent
DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0155313

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.029129900000000004

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00307909

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00452775

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.029349

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00836835

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0112988

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0067734

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.030998400000000002

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00498526

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0477549

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.025074700000000002

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.015713

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00502355

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.023952200000000003

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00497956

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00757783

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.015068000000000002

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.016903099999999997

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0180416

Absent
Unique Cell types only Homer finds Myf5: #2

Cell typeModiscoHomer
wES;FaceP;E11.5;D;EnAbsent

Pattern: motif7.motif

Significance: 0.0532775

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.019734799999999997