In [1]:
# Parameters
data_name = "Barhl2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:58:20,724 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Barhl2: Motif: M00460_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Barhl2: #10

Cell typeModiscoHomer
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012645700000000001

Pattern: motif9.motif

Significance: 0.0298433

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0515828

Pattern: motif6.motif

Significance: 0.0346907

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00668942

Pattern: motif2.motif

Significance: 0.018043599999999996

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0055198

Pattern: motif3.motif

Significance: 0.0187457

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.03448590000000001

Pattern: motif13.motif

Significance: 0.0447953

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0154988

Pattern: motif4.motif

Significance: 0.0149477

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00789525

Pattern: motif2.motif

Significance: 0.030482299999999997

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00776433

Pattern: motif2.motif

Significance: 0.030481599999999998

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0127442

Pattern: motif6.motif

Significance: 0.0226359

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00803521

Pattern: motif2.motif

Significance: 0.038789699999999996

Unique Cell types only TF-MoDISco finds Barhl2: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00552932

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00834712

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00431057

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00533454

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0394385

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.004273600000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00384251

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0584442

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0499399

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.031688799999999996

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0240603

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0531252

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0496159

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0548141

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0593674

Absent
Unique Cell types only Homer finds Barhl2: #9

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0215532

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0394772

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0342721

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.0451021

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0407287

Fr_BRN;P0;D;EnAbsent

Pattern: motif10.motif

Significance: 0.0414295

BL_CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0433392

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.029958600000000002

Md_BRN;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0512044