In [1]:
# Parameters
data_name = "Hoxa6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:22,615 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa6: Motif: M00494_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa6: #14

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00195839

/

Pattern: metacluster_0/pattern_5

Significance: 0.044848900000000004

Pattern: motif8.motif

Significance: 0.00275134

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0233041

/

Pattern: metacluster_0/pattern_3

Significance: 0.00246246

Pattern: motif3.motif

Significance: 0.046661900000000006

/

Pattern: motif5.motif

Significance: 0.043631699999999995

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0389176

Pattern: motif4.motif

Significance: 0.00435788

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0144732

Pattern: motif9.motif

Significance: 0.021100999999999998

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0189977

Pattern: motif2.motif

Significance: 0.050971300000000004

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.018814700000000004

Pattern: motif3.motif

Significance: 0.054024699999999995

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.030969599999999996

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0148063

Pattern: motif13.motif

Significance: 0.0352714

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.0449673

Pattern: motif3.motif

Significance: 0.013829

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0510653

Pattern: motif15.motif

Significance: 0.0436849

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0113272

Pattern: motif2.motif

Significance: 0.0579871

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.041319

Pattern: motif4.motif

Significance: 0.0336464

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00912788

Pattern: motif2.motif

Significance: 0.0526658

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00942521

Pattern: motif14.motif

Significance: 0.0298959

Unique Cell types only TF-MoDISco finds Hoxa6: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.039114499999999996

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00328345

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0513773

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0206207

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000266477

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.034707999999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0505859

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000378697

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00461815

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.041688499999999996

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00827525

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.022073699999999998

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0496159

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0488875

Absent
Unique Cell types only Homer finds Hoxa6: #4

Cell typeModiscoHomer
wES;Hnd_BRN;E14.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.028829900000000002

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.047455000000000004

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00138947

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0300659