In [1]:
# Parameters
data_name = "Vax2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:47:20,368 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Vax2: Motif: M00464_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Vax2: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000478719

Pattern: motif4.motif

Significance: 0.04180759999999999

/

Pattern: motif8.motif

Significance: 0.027076299999999998

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 2.9003800000000002e-05

Pattern: motif3.motif

Significance: 0.023415099999999998

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00326558

Pattern: motif3.motif

Significance: 0.0216013

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00370386

Pattern: motif9.motif

Significance: 0.00678937

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.007151899999999999

Pattern: motif6.motif

Significance: 0.0105419

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00154164

Pattern: motif2.motif

Significance: 0.00313465

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00128098

Pattern: motif3.motif

Significance: 0.00299396

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.038613

Pattern: motif3.motif

Significance: 0.0166082

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00421285

Pattern: motif13.motif

Significance: 0.00897489

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0025138

Pattern: motif4.motif

Significance: 0.0061121000000000005

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00182567

Pattern: motif2.motif

Significance: 0.00263797

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00277031

Pattern: motif2.motif

Significance: 0.00219444

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.029966900000000005

Pattern: motif10.motif

Significance: 0.0137204

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.0053328

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.023000299999999998

Pattern: motif13.motif

Significance: 0.0093836

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00263525

Pattern: motif6.motif

Significance: 0.0132139

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0252311

Pattern: motif16.motif

Significance: 0.011452500000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00178427

Pattern: motif2.motif

Significance: 0.00284054

Unique Cell types only TF-MoDISco finds Vax2: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.05608540000000001

/

Pattern: metacluster_0/pattern_25

Significance: 0.00385457

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0133401

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000134401

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0419682

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.038649699999999995

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00236189

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 3.9025300000000003e-08

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.031157099999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.018796200000000002

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000542807

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0055728

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00316383

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00399263

Absent
Unique Cell types only Homer finds Vax2: #6

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0527775

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0572096

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0124966

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0386226