# Parameters
data_name = "Obox6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:26:23,144 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Obox6: Motif: M00490_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Obox6: #8

Cell type	Modisco	Homer
RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.050145	Pattern: motif2.motif Significance: 0.0124934
RTN;D1;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.014160599999999999	Pattern: motif5.motif Significance: 0.00573325
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.0245343	Pattern: motif3.motif Significance: 0.049201999999999996
ROD_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0555139	Pattern: motif2.motif Significance: 0.0068484999999999996
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.028107599999999996	Pattern: motif3.motif Significance: 0.020192099999999998
GCN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.033815899999999996	Pattern: motif2.motif Significance: 0.0133127
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.037286900000000005	Pattern: motif2.motif Significance: 0.027540600000000002
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0260876	Pattern: motif2.motif Significance: 0.0108561

Unique Cell types only TF-MoDISco finds Obox6: #5

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.016121299999999998	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.0485499	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.0121759	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0572048	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.044567199999999994	Absent

No Cell types only Homer finds Obox6