In [1]:
# Parameters
data_name = "Hoxd8"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend.
2019-08-23 11:13:44,499 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)
TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxd8: Motif: M00436_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxd8: #6

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00517253

/

Pattern: metacluster_0/pattern_5

Significance: 0.00991479

Pattern: motif8.motif

Significance: 0.00397624

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00514658

/

Pattern: metacluster_0/pattern_3

Significance: 0.00918384

Pattern: motif5.motif

Significance: 0.0194039

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00689714

Pattern: motif4.motif

Significance: 0.0125818

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00204802

Pattern: motif2.motif

Significance: 0.019931900000000002

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.014254

Pattern: motif15.motif

Significance: 0.0400108

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.00768769

Pattern: motif3.motif

Significance: 0.013162100000000001

Unique Cell types only TF-MoDISco finds Hoxd8: #13

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.05819149999999999

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.030814599999999998

/

Pattern: metacluster_1/pattern_13

Significance: 0.0103644

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.048894

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0283442

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00203961

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.044681

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0526994

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0460722

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00451341

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0378847

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0332289

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.022412

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.023600299999999998

Absent
Unique Cell types only Homer finds Hoxd8: #2

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.054539300000000006

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00072506