In [1]:
# Parameters
data_name = "Prrx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:30:10,482 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Prrx2: Motif: M09207_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Prrx2: #24

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00656218

/

Pattern: metacluster_0/pattern_7

Significance: 0.048001999999999996

Pattern: motif4.motif

Significance: 0.021762200000000002

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0386932

/

Pattern: metacluster_1/pattern_13

Significance: 0.00340992

Pattern: motif5.motif

Significance: 0.05217669999999999

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00302253

Pattern: motif3.motif

Significance: 0.0118057

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0379366

Pattern: motif14.motif

Significance: 0.05582430000000001

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0373213

Pattern: motif3.motif

Significance: 0.0356255

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0470133

Pattern: motif6.motif

Significance: 0.0252888

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.052808900000000006

Pattern: motif9.motif

Significance: 0.0488397

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0317996

Pattern: motif13.motif

Significance: 0.0234943

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00313145

Pattern: motif16.motif

Significance: 0.026902099999999995

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00611208

Pattern: motif9.motif

Significance: 0.013073300000000001

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Pattern: motif7.motif

Significance: 0.0409827

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0451408

Pattern: motif3.motif

Significance: 0.041451800000000004

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00773523

Pattern: motif13.motif

Significance: 0.016896400000000002

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00475141

Pattern: motif2.motif

Significance: 0.025925200000000002

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.011706999999999999

Pattern: motif6.motif

Significance: 0.0274474

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00434305

Pattern: motif2.motif

Significance: 0.0103891

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00242006

Pattern: motif3.motif

Significance: 0.010318700000000002

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00535047

Pattern: motif4.motif

Significance: 0.00996156

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00428006

Pattern: motif2.motif

Significance: 0.0573201

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0389596

Pattern: motif10.motif

Significance: 0.033520999999999995

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0530591

/

Pattern: metacluster_0/pattern_8

Significance: 0.00519214

Pattern: motif3.motif

Significance: 0.018954

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00282495

Pattern: motif6.motif

Significance: 0.026877099999999998

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0159836

Pattern: motif14.motif

Significance: 0.00727036

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00433161

Pattern: motif2.motif

Significance: 0.022953400000000002

Unique Cell types only TF-MoDISco finds Prrx2: #20

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0369166

/

Pattern: metacluster_0/pattern_25

Significance: 0.0194935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0127158

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00720191

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.028618200000000003

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.04384469999999999

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00448177

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.051319000000000004

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399621

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.042293

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0483983

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0464952

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.05587999999999999

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0235818

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00483101

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.059681200000000004

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0351718

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00382325

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.042902800000000005

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0366309

Absent
Unique Cell types only Homer finds Prrx2: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.032470599999999995

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.024592

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0272295