In [1]:
# Parameters
data_name = "Pou1f1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:28:30,067 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Pou1f1: Motif: M00802_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou1f1: #19

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.05266219999999999

Pattern: motif4.motif

Significance: 0.0368469

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.026868299999999998

Pattern: motif3.motif

Significance: 0.0259237

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0567813

/

Pattern: metacluster_0/pattern_8

Significance: 0.018061599999999997

Pattern: motif3.motif

Significance: 0.0216013

ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399505

Pattern: motif26.motif

Significance: 0.010873200000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0215581

Pattern: motif9.motif

Significance: 0.05325030000000001

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012624

Pattern: motif6.motif

Significance: 0.0165078

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0287849

Pattern: motif2.motif

Significance: 0.00378096

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0152631

Pattern: motif3.motif

Significance: 0.00357708

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0393399

Pattern: motif13.motif

Significance: 0.00897489

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0248847

Pattern: motif4.motif

Significance: 0.010807899999999999

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0277046

Pattern: motif2.motif

Significance: 0.00352284

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0595182

Pattern: motif2.motif

Significance: 0.00268539

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0156909

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.030382299999999998

Pattern: motif14.motif

Significance: 0.0483447

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.0093836

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0588555

/

Pattern: metacluster_0/pattern_8

Significance: 0.0177931

Pattern: motif6.motif

Significance: 0.0147411

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0419284

Pattern: motif15.motif

Significance: 0.0597043

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0594183

Pattern: motif16.motif

Significance: 0.011185200000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0241353

Pattern: motif2.motif

Significance: 0.003173

/

Pattern: motif24.motif

Significance: 0.0179525

Unique Cell types only TF-MoDISco finds Pou1f1: #19

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0511601

/

Pattern: metacluster_0/pattern_25

Significance: 0.05794780000000001

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.03236459999999999

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.046745

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0547105

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.038649699999999995

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00820366

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00255856

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0556184

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0524832

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.049647500000000004

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.039818599999999996

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0236804

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0528063

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0341902

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0403921

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00208885

Absent
Unique Cell types only Homer finds Pou1f1: #4

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0112023

MTR_NRN_MN1;methyl3;D;EnAbsent

Pattern: motif6.motif

Significance: 0.0365497

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.0434343

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.01744