In [1]:
# Parameters
data_name = "Isl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:14:26,571 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Isl1: Motif: M09578_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Isl1: #15

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.024013800000000002

Pattern: motif4.motif

Significance: 0.0529923

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.011785200000000001

Pattern: motif3.motif

Significance: 0.051932500000000006

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.034736800000000005

Pattern: motif6.motif

Significance: 0.0597406

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.016844900000000003

Pattern: motif2.motif

Significance: 0.0302436

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Pattern: motif7.motif

Significance: 0.0445373

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.013743100000000001

Pattern: motif3.motif

Significance: 0.0198125

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0301967

Pattern: motif16.motif

Significance: 0.052257200000000004

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.027601799999999996

Pattern: motif13.motif

Significance: 0.0447953

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0248847

Pattern: motif4.motif

Significance: 0.0391056

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.04408309999999999

Pattern: motif2.motif

Significance: 0.0246218

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0544944

Pattern: motif2.motif

Significance: 0.0322216

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0569952

Pattern: motif13.motif

Significance: 0.045148400000000005

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0451961

Pattern: motif6.motif

Significance: 0.048762900000000005

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0583549

Pattern: motif14.motif

Significance: 0.0330781

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0395272

Pattern: motif2.motif

Significance: 0.026125

Unique Cell types only TF-MoDISco finds Isl1: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0374966

/

Pattern: metacluster_0/pattern_25

Significance: 0.0275356

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0493667

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.017274599999999998

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.043489

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.010260700000000001

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00596691

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.030002800000000003

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0309618

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0366233

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.020186700000000002

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0544418

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0172132

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0202828

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0366739

Absent
Unique Cell types only Homer finds Isl1: #2

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.031042700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0521048