# Parameters
data_name = "Irf4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:14:10,118 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.00031267 |
Significance: 7.924479999999999e-05 |
memT;CD4+;A;CL |
Significance: 0.0175 |
Significance: 0.0277464 |
proB;A;CL |
Significance: 1.02748e-06 |
Significance: 0.000265148 |
preB;A;CL |
Significance: 0.000104466 |
Significance: 0.000294942 |
immatureB;A;CL |
Significance: 0.00014596799999999998 |
Significance: 0.000163756 |
matureB;A;CL |
Significance: 0.000125742 |
Significance: 0.000277313 |
MZ_B;A;CL |
Significance: 1.34989e-09 |
Significance: 7.58463e-05 |
B1_B;A;CL |
Significance: 5.41649e-05 |
Significance: 0.000282943 |
GC_B;A;CL |
Significance: 3.29713e-05 |
Significance: 0.00010661700000000001 |
plasmaB;A;CL |
Significance: 0.00243659 |
Significance: 0.0119258 |
aB_LPS;A;CL |
Significance: 5.86255e-05 |
Significance: 0.0286072 |
aB_LPS+IL4;A;CL |
Significance: 0.00011544700000000001 |
Significance: 0.0532383 |
aB_LPS+IL21;A;CL |
Significance: 8.401989999999999e-05 |
Significance: 0.0528472 |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.00010268299999999999 |
Significance: 0.0437754 |
aB_CD40+IL4;A;CL |
Significance: 0.000169817 |
Significance: 0.040966 |
Mast;A;CL |
Significance: 9.902370000000001e-05 |
Significance: 0.0534837 |
BSPHL;A;CL |
Significance: 0.000128176 |
Significance: 0.00959109 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.000310252 |
Significance: 0.0538405 |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00031219 |
Significance: 0.026451 |
NTRPHL;A;CL |
Significance: 5.64183e-05 |
Significance: 0.0450686 |
Tfh_mut;A;CL |
Significance: 0.00394488 |
Significance: 0.0410553 |
aNonTfh_mut;A;CL |
Significance: 0.0239188 |
Significance: 0.053745600000000004 |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.05949550000000001 |
Significance: 0.0489837 |
largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0237125 |
Significance: 0.0542485 |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0210068 |
Significance: 0.0217172 |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.026695599999999996 |
Significance: 0.00273797 |
DC_BMD;A;CL |
Significance: 1.19864e-07 |
Significance: 2.55017e-08 |
MCRPHG;A;CL |
Significance: 5.28371e-06 |
Significance: 1.61245e-07 |
DP3a;A;CL |
Significance: 0.022359099999999996 |
Significance: 0.0368352 |
DP3b;A;CL |
Significance: 0.0236425 |
Significance: 0.032785699999999994 |
LRG_INTSTN;A;CL |
Significance: 0.00170153 |
Significance: 0.036883400000000004 |
Adipose;A;CL |
Significance: 0.014571200000000001 |
Significance: 0.0594345 |
PNCRS;A;CL |
Significance: 0.046812599999999996 |
Significance: 0.0478289 |
restingB;A;CL |
Significance: 0.00021223900000000003 |
Significance: 4.43825e-08 |
aB;CD180;A;CL |
Significance: 9.99925e-05 |
Significance: 0.00301818 |
LNG_TRM_HSC;A;CL |
Significance: 0.000575522 |
Significance: 0.0208907 |
SHRT_TRM_HSC;A;CL |
Significance: 0.000271747 |
Significance: 0.00030523299999999997 |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.00017209400000000002 |
Significance: 8.85394e-05 |
ILC2_Nippo;A;CL |
Significance: 0.0230699 |
Significance: 0.0599499 |
ILC1;A;CL |
Significance: 0.0200542 |
Significance: 0.054062099999999995 |
NCR+ILC3+IL23;A;CL |
Significance: 0.0164951 |
Significance: 0.010017100000000001 |
aB_LPS+IL4_24h;A;CL |
Significance: 0.000470306 |
Significance: 0.0424402 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 5.48081e-07 |
Significance: 0.051811800000000005 |
CH12_QNTPLE;A;CL |
Significance: 0.000183437 |
Significance: 0.000518945 |
wCH12;A;CL |
Significance: 5.35781e-06 |
Significance: 0.000432496 |
wCH12_drug;A;CL |
Significance: 9.27981e-09 |
Significance: 0.000494737 |
CLP;A;CL |
Significance: 0.000153971 |
Significance: 2.2925500000000003e-05 |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0201364 |
Significance: 0.00627088 |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0270217 |
Significance: 0.00664201 |
NTRPHL;A;GEO |
Significance: 0.000609756 |
Significance: 0.050361500000000003 |
ILC2;A;GEO |
Significance: 0.0199886 |
Significance: 0.0228729 |
ILC3;A;GEO |
Significance: 0.0160563 |
Significance: 0.00341291 |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.014971200000000002 |
Significance: 0.0464625 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.0257807 |
Significance: 0.0370577 |
naiveT;CD8+;A;GEO |
Significance: 0.0216852 |
Significance: 0.045226800000000004 |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0193613 |
Significance: 0.00929791 |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.025803800000000002 |
Significance: 0.026647900000000006 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0272324 |
Significance: 0.036168900000000004 |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.0242232 |
Significance: 0.0161405 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.035623400000000006 |
Significance: 0.033576199999999994 |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.02436 |
Significance: 0.0318289 |
cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0197701 |
Significance: 0.0256122 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.017249 |
Significance: 0.0198189 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.027406299999999998 |
Significance: 0.0237224 |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.026815 |
Significance: 0.00316596 |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0337641 |
Significance: 0.0371885 |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.024644299999999997 |
Significance: 0.0117676 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00773688 |
Significance: 0.00878155 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0157481 |
Significance: 0.00256616 |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0154281 |
Significance: 0.0587466 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00856597 |
Significance: 0.0359291 |
iNKT;A;GEO |
Significance: 0.0253878 |
Significance: 0.0231251 |
aB;A;GEO |
Significance: 0.00020041299999999998 |
Significance: 6.79686e-05 |
prePLSM_B;A;GEO |
Significance: 7.51702e-05 |
Significance: 6.46107e-05 |
B_SPLND;A;GEO |
Significance: 0.000141713 |
Significance: 0.000545579 |
preB_BMD;A;GEO |
Significance: 9.060789999999999e-06 |
Significance: 4.8155e-05 |
B;B220_CD43;A;GEO |
Significance: 0.012056 |
Significance: 0.00026783 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 3.95063e-05 |
Significance: 0.000216233 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 5.838290000000001e-06 |
Significance: 4.75448e-06 |
AML;AE9a;A;GEO |
Significance: 0.000556175 |
Significance: 0.00035256400000000003 |
DC_LPS;6h;A;GEO |
Significance: 7.80378e-08 |
Significance: 6.75116e-07 |
DC_LPS;2h;A;GEO |
Significance: 6.571780000000001e-08 |
Significance: 2.0475099999999997e-06 |
DC_pBMD;A;GEO |
Significance: 1.63404e-05 |
Significance: 1.37992e-07 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.00133347 |
Significance: 0.00285166 |
pMeg;A;En |
Significance: 1.58835e-06 |
Significance: 2.5693200000000002e-06 |
MegP;A;En |
Significance: 3.8906300000000004e-05 |
Significance: 7.3661000000000005e-06 |
pCMP;A;CL |
Significance: 6.02204e-05 |
Significance: 5.15392e-05 |
DC_LPS;4h;A;En |
Significance: 3.38033e-05 |
Significance: 2.61931e-07 |
pGMP;A;En |
Significance: 6.414619999999999e-07 |
Significance: 8.84076e-07 |
DC;A;En |
Significance: 8.121669999999998e-06 |
Significance: 1.65541e-06 |
Treg;CD4+_CD25+;D;GEO |
Significance: 0.00075176 |
Significance: 0.0250497 |
apTreg;D;GEO |
Significance: 0.00355199 |
Significance: 0.0243433 |
immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 1.3677500000000002e-06 |
Significance: 0.00155049 |
416B_MP;CD34+;D;GEO |
Significance: 0.00181978 |
Significance: 0.035169900000000004 |
LNG;8wks;D;En |
Significance: 0.00285445 |
Significance: 0.000601877 |
wES;LNG;E14.5;D;En |
Significance: 0.0398206 |
Significance: 0.056889199999999994 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00420032 |
Significance: 0.0543459 |
416B_MP;CD34+;D;En |
Significance: 0.00168157 |
Significance: 0.0400335 |
immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 7.080079999999999e-09 |
Significance: 0.000138799 |
LRG_INTSTN;8wks;D;En |
Significance: 0.0183102 |
Significance: 0.00365746 |
Spleen;8wks;D;En |
Significance: 0.00018062099999999998 |
Significance: 0.0005730630000000001 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00133052 |
Significance: 0.00714961 |
A20;B-lymphoma;D;En |
Significance: 0.05427280000000001 |
Significance: 0.000264211 |
AML;D;En |
Significance: 2.97635e-05 |
Significance: 4.431359999999999e-06 |
CH12.LX;D;En |
Significance: 1.25994e-06 |
Significance: 0.0285159 |
MEF.GATA-1-ER;D;En |
Significance: 7.80058e-06 |
Significance: 3.50427e-05 |
MEL;D;En |
Significance: 5.49768e-06 |
Significance: 1.4577400000000002e-07 |
MEL_Znc_di-cl;24h;D;En |
Significance: 4.90912e-06 |
Significance: 1.43729e-07 |
Cell type | Modisco | Homer |
---|---|---|
naiveCD8;A;CL |
Significance: 0.011001899999999998 | Absent |
Th17;CD4+;A;CL |
Significance: 0.00976168 | Absent |
NK_SPLND;A;CL |
Significance: 0.0162705 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.00908235 | Absent |
Tfh;A;CL |
Significance: 0.021941400000000003 | Absent |
aNonTfh;A;CL |
Significance: 0.026798900000000004 | Absent |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.019862 | Absent |
naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0229737 | Absent |
naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0412745 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.026405 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.0269747 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0188842 | Absent |
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0255606 | Absent |
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0351179 | Absent |
CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.035600900000000005 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.023783099999999998 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0182602 | Absent |
Erythroblast;A;CL |
Significance: 0.0174757 | Absent |
DP;A;CL |
Significance: 0.05295130000000001 | Absent |
ISP;A;CL |
Significance: 0.015823300000000002 | Absent |
ES;MEF;A;CL |
Significance: 0.0179725 | Absent |
SML_INTSTN;A;CL |
Significance: 0.0531164 | Absent |
LNG;A;CL |
Significance: 0.000358688 | Absent |
Muscle;A;CL |
Significance: 0.00125669 | Absent |
Heart;D;En |
Significance: 0.0321213 | Absent |
Mammary;A;CL |
Significance: 0.014452000000000001 | Absent |
Adrenal;A;CL |
Significance: 0.00641414 | Absent |
placenta;A;CL |
Significance: 0.00271449 | Absent |
SPNL_CHRD;A;CL |
Significance: 0.00520317 | Absent |
STMCH;A;CL |
Significance: 0.0181611 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.0262999 | Absent |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.00140328 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.0251625 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.0015286 | Absent |
gamma_delta_TCR;A;CL |
Significance: 0.000537676 | Absent |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.00639634 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.018466 | Absent |
ILC2precrsr;A;CL |
Significance: 0.015706499999999998 | Absent |
NCR+ILC3;A;CL |
Significance: 0.0304906 | Absent |
ILC2;A;CL |
Significance: 0.0432176 | Absent |
Th2_nippo;A;CL |
Significance: 0.026300999999999998 | Absent |
CH12;med14;A;CL |
Significance: 3.92321e-05 | Absent |
Mammary_GLND;A;GEO |
Significance: 0.0454015 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0390159 | Absent |
ILC2+IL33+IL25;A;GEO |
Significance: 0.015256200000000001 | Absent |
ILC1;A;GEO |
Significance: 0.0197852 | Absent |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.024616700000000002 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.026176299999999996 | Absent |
naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0378122 | Absent |
Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.047975699999999996 | Absent |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0256447 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0170424 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0227537 | Absent |
Erythroid;Ter119+;A;GEO |
Significance: 0.010743 | Absent |
ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.00401246 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.012662799999999998 | Absent |
CN_PHT_RCPTR;A;GEO |
Significance: 0.00186733 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.043118699999999996 | Absent |
SKN_EPTHL;A;GEO |
Significance: 0.00511886 | Absent |
BCK_SKN;A;GEO |
Significance: 0.00186499 | Absent |
NPC;G4;A;GEO |
Significance: 0.00512537 | Absent |
Corticotrope;A;GEO |
Significance: 0.010626 | Absent |
Melanotrope;A;GEO |
Significance: 0.0117675 | Absent |
Mammary_BptfKO;A;GEO |
Significance: 0.00888159 | Absent |
EPP;A;En |
Significance: 0.0170766 | Absent |
MegEP;A;CL |
Significance: 0.00899988 | Absent |
pErythroblast;A;En |
Significance: 0.0429329 | Absent |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.036451599999999994 | Absent |
LVR;8wks;D;GEO |
Significance: 0.00953071 | Absent |
LNG;8wks;D;GEO |
Significance: 0.00492196 | Absent |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.00046768300000000004 | Absent |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0184484 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0363093 | Absent |
apCD4Eff;D;GEO |
Significance: 0.028145999999999997 | Absent |
FBRBLST;8wks;D;En |
Significance: 0.0350792 | Absent |
3T3-L1;FBRBLST;D;En |
Significance: 0.0212305 | Absent |
KDNY;P0;D;En |
Significance: 0.025666900000000003 | Absent |
KDNY;8wks;D;En |
Significance: 0.05818330000000001 | Absent |
LVR;8wks;D;En |
Significance: 0.0205527 | Absent |
wES;LVR;E11.5;D.;En |
Significance: 0.0141446 | Absent |
LVR;P0;D;En |
Significance: 0.000158596 | Absent |
LNG;P0;D;En |
Significance: 0.016994099999999998 | Absent |
Heart;8wks;D;En |
Significance: 0.0317376 | Absent |
Heart;P0;D;En |
Significance: 0.0209194 | Absent |
apThEff;CD4+;8wks;D;En. |
Significance: 0.0551518 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.012817799999999999 | Absent |
apTreg;8wk;D;En |
Significance: 0.010817 | Absent |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.03591969999999999 | Absent |
wES;MSDRM;E11.5;D;En |
Significance: 0.0555747 | Absent |
Muller;P12;D;En |
Significance: 0.000794143 | Absent |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.0257829 | Absent |
WHL_BRN;8wks;D;En |
Significance: 0.00607883 | Absent |
wES;Telenchephalon;D;En |
Significance: 0.0444936 | Absent |
wES;limb;E14.5;D;En |
Significance: 0.043533300000000004 | Absent |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.034366900000000006 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.0106472 | Absent |
wES;FaceP;E11.5;D;En |
Significance: 0.0597126 | Absent |
wES;NRL_Tube;E11.5;D;En |
Significance: 0.0089284 | Absent |
STMCH;P0;D;En |
Significance: 0.0506707 | Absent |
SKLTL_Muscle;8wks;D;En |
Significance: 0.00216622 | Absent |
3134_mammaryADNCRCNM;D;En |
Significance: 0.015204800000000001 | Absent |
NIH3T3;D;En |
Significance: 0.0359429 | Absent |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0297612 | Absent |
MN1;D;En |
Significance: 0.00408185 | Absent |
3T3-L1;D;En |
Significance: 0.0487241 | Absent |